Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Brf1Q8CFK2 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC27.05■■□□□ 1.92
Brf1Q8CFK2 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Brf1Q8CFK2 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC27.05■■□□□ 1.92
Brf1Q8CFK2 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
Brf1Q8CFK2 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Brf1Q8CFK2 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC27.04■■□□□ 1.92
Brf1Q8CFK2 AC151971.4-201ENSMUST00000214717 704 ntBASIC27.03■■□□□ 1.92
Brf1Q8CFK2 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC27.02■■□□□ 1.92
Brf1Q8CFK2 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC27.02■■□□□ 1.92
Brf1Q8CFK2 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC27.02■■□□□ 1.92
Brf1Q8CFK2 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Brf1Q8CFK2 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC27.01■■□□□ 1.91
Brf1Q8CFK2 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC27.01■■□□□ 1.91
Brf1Q8CFK2 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Brf1Q8CFK2 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
Brf1Q8CFK2 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Brf1Q8CFK2 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC27.01■■□□□ 1.91
Brf1Q8CFK2 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC27■■□□□ 1.91
Brf1Q8CFK2 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC27■■□□□ 1.91
Brf1Q8CFK2 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC27■■□□□ 1.91
Brf1Q8CFK2 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC26.99■■□□□ 1.91
Brf1Q8CFK2 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Brf1Q8CFK2 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
Brf1Q8CFK2 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Brf1Q8CFK2 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC26.98■■□□□ 1.91
Brf1Q8CFK2 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC26.98■■□□□ 1.91
Brf1Q8CFK2 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Brf1Q8CFK2 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
Brf1Q8CFK2 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
Brf1Q8CFK2 H3f3aos-201ENSMUST00000097448 2905 ntBASIC26.97■■□□□ 1.91
Brf1Q8CFK2 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC26.97■■□□□ 1.91
Brf1Q8CFK2 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC26.97■■□□□ 1.91
Brf1Q8CFK2 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC26.96■■□□□ 1.91
Brf1Q8CFK2 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
Brf1Q8CFK2 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
Brf1Q8CFK2 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC26.95■■□□□ 1.9
Brf1Q8CFK2 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC26.95■■□□□ 1.9
Brf1Q8CFK2 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
Brf1Q8CFK2 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC26.95■■□□□ 1.9
Brf1Q8CFK2 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC26.95■■□□□ 1.9
Brf1Q8CFK2 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Brf1Q8CFK2 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC26.94■■□□□ 1.9
Brf1Q8CFK2 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC26.94■■□□□ 1.9
Brf1Q8CFK2 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC26.93■■□□□ 1.9
Brf1Q8CFK2 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC26.92■■□□□ 1.9
Brf1Q8CFK2 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Brf1Q8CFK2 Gm44428-201ENSMUST00000204474 874 ntBASIC26.92■■□□□ 1.9
Brf1Q8CFK2 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
Brf1Q8CFK2 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Brf1Q8CFK2 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Brf1Q8CFK2 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC26.9■■□□□ 1.9
Brf1Q8CFK2 Gm7199-201ENSMUST00000118327 1485 ntBASIC26.9■■□□□ 1.9
Brf1Q8CFK2 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC26.9■■□□□ 1.9
Brf1Q8CFK2 Gm27502-201ENSMUST00000183495 199 ntBASIC26.9■■□□□ 1.9
Brf1Q8CFK2 Mir6538-201ENSMUST00000183713 110 ntBASIC26.9■■□□□ 1.9
Brf1Q8CFK2 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
Brf1Q8CFK2 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC26.9■■□□□ 1.9
Brf1Q8CFK2 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC26.89■■□□□ 1.9
Brf1Q8CFK2 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC26.89■■□□□ 1.9
Brf1Q8CFK2 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC26.89■■□□□ 1.9
Brf1Q8CFK2 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
Brf1Q8CFK2 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
Brf1Q8CFK2 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC26.89■■□□□ 1.89
Brf1Q8CFK2 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
Brf1Q8CFK2 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Brf1Q8CFK2 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC26.86■■□□□ 1.89
Brf1Q8CFK2 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
Brf1Q8CFK2 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC26.86■■□□□ 1.89
Brf1Q8CFK2 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
Brf1Q8CFK2 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC26.86■■□□□ 1.89
Brf1Q8CFK2 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
Brf1Q8CFK2 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Brf1Q8CFK2 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC26.85■■□□□ 1.89
Brf1Q8CFK2 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC26.85■■□□□ 1.89
Brf1Q8CFK2 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Brf1Q8CFK2 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
Brf1Q8CFK2 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Brf1Q8CFK2 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
Brf1Q8CFK2 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC26.83■■□□□ 1.89
Brf1Q8CFK2 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Brf1Q8CFK2 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC26.82■■□□□ 1.88
Brf1Q8CFK2 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Brf1Q8CFK2 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
Brf1Q8CFK2 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
Brf1Q8CFK2 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Brf1Q8CFK2 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Brf1Q8CFK2 Gm6934-201ENSMUST00000194780 1905 ntBASIC26.82■■□□□ 1.88
Brf1Q8CFK2 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
Brf1Q8CFK2 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC26.81■■□□□ 1.88
Brf1Q8CFK2 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC26.79■■□□□ 1.88
Brf1Q8CFK2 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC26.79■■□□□ 1.88
Brf1Q8CFK2 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Brf1Q8CFK2 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
Brf1Q8CFK2 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Brf1Q8CFK2 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Brf1Q8CFK2 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
Brf1Q8CFK2 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC26.77■■□□□ 1.88
Brf1Q8CFK2 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Brf1Q8CFK2 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms