Protein–RNA interactions for Protein: Q64519

Sdc3, Syndecan-3, mousemouse

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc3Q64519 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Sdc3Q64519 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21.33■■□□□ 1
Sdc3Q64519 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC21.32■■□□□ 1
Sdc3Q64519 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
Sdc3Q64519 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC21.32■■□□□ 1
Sdc3Q64519 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC21.32■■□□□ 1
Sdc3Q64519 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Sdc3Q64519 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Sdc3Q64519 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC21.32■■□□□ 1
Sdc3Q64519 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC21.32■■□□□ 1
Sdc3Q64519 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Sdc3Q64519 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Sdc3Q64519 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Sdc3Q64519 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC21.31■■□□□ 1
Sdc3Q64519 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Sdc3Q64519 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Sdc3Q64519 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC21.31■■□□□ 1
Sdc3Q64519 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC21.31■■□□□ 1
Sdc3Q64519 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Sdc3Q64519 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Sdc3Q64519 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC21.29■■□□□ 1
Sdc3Q64519 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Sdc3Q64519 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
Sdc3Q64519 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC21.28■■□□□ 1
Sdc3Q64519 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Sdc3Q64519 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Sdc3Q64519 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Sdc3Q64519 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC21.27■■□□□ 1
Sdc3Q64519 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC21.27■■□□□ 1
Sdc3Q64519 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Sdc3Q64519 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Sdc3Q64519 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Sdc3Q64519 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sdc3Q64519 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sdc3Q64519 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sdc3Q64519 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sdc3Q64519 Gm44428-201ENSMUST00000204474 874 ntBASIC21.26■□□□□ 0.99
Sdc3Q64519 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Sdc3Q64519 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sdc3Q64519 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Sdc3Q64519 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sdc3Q64519 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sdc3Q64519 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sdc3Q64519 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sdc3Q64519 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Sdc3Q64519 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sdc3Q64519 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Sdc3Q64519 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Sdc3Q64519 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sdc3Q64519 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sdc3Q64519 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sdc3Q64519 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sdc3Q64519 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC21.24■□□□□ 0.99
Sdc3Q64519 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Sdc3Q64519 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sdc3Q64519 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sdc3Q64519 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sdc3Q64519 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Sdc3Q64519 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC21.22■□□□□ 0.99
Sdc3Q64519 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sdc3Q64519 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sdc3Q64519 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sdc3Q64519 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sdc3Q64519 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sdc3Q64519 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sdc3Q64519 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Sdc3Q64519 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sdc3Q64519 Gm5067-201ENSMUST00000170449 1009 ntBASIC21.21■□□□□ 0.99
Sdc3Q64519 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Sdc3Q64519 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Sdc3Q64519 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Sdc3Q64519 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
Sdc3Q64519 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC21.2■□□□□ 0.98
Sdc3Q64519 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Sdc3Q64519 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Sdc3Q64519 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
Sdc3Q64519 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Sdc3Q64519 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Sdc3Q64519 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Sdc3Q64519 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Sdc3Q64519 Gm10420-201ENSMUST00000121713 882 ntBASIC21.19■□□□□ 0.98
Sdc3Q64519 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Sdc3Q64519 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Sdc3Q64519 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Sdc3Q64519 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Sdc3Q64519 AC164433.2-201ENSMUST00000226346 1701 ntBASIC21.18■□□□□ 0.98
Sdc3Q64519 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Sdc3Q64519 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Sdc3Q64519 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC21.18■□□□□ 0.98
Sdc3Q64519 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Sdc3Q64519 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC21.17■□□□□ 0.98
Sdc3Q64519 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Sdc3Q64519 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Sdc3Q64519 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC21.17■□□□□ 0.98
Sdc3Q64519 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC21.17■□□□□ 0.98
Sdc3Q64519 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Sdc3Q64519 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Sdc3Q64519 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC21.16■□□□□ 0.98
Sdc3Q64519 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Sdc3Q64519 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms