Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC20.59■□□□□ 0.89
Usf1Q61069 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usf1Q61069 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usf1Q61069 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Usf1Q61069 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usf1Q61069 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usf1Q61069 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Usf1Q61069 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC20.58■□□□□ 0.89
Usf1Q61069 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usf1Q61069 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Usf1Q61069 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usf1Q61069 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Usf1Q61069 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Usf1Q61069 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC20.56■□□□□ 0.88
Usf1Q61069 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usf1Q61069 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Usf1Q61069 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usf1Q61069 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usf1Q61069 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Usf1Q61069 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usf1Q61069 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usf1Q61069 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Usf1Q61069 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usf1Q61069 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Usf1Q61069 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usf1Q61069 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usf1Q61069 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC20.54■□□□□ 0.88
Usf1Q61069 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usf1Q61069 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usf1Q61069 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usf1Q61069 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usf1Q61069 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usf1Q61069 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Usf1Q61069 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usf1Q61069 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Usf1Q61069 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usf1Q61069 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usf1Q61069 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC20.52■□□□□ 0.88
Usf1Q61069 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Usf1Q61069 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Usf1Q61069 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Usf1Q61069 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC20.51■□□□□ 0.87
Usf1Q61069 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC20.51■□□□□ 0.87
Usf1Q61069 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usf1Q61069 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC20.51■□□□□ 0.87
Usf1Q61069 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Usf1Q61069 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Usf1Q61069 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Usf1Q61069 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC20.5■□□□□ 0.87
Usf1Q61069 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC20.5■□□□□ 0.87
Usf1Q61069 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC20.5■□□□□ 0.87
Usf1Q61069 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Usf1Q61069 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Usf1Q61069 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Usf1Q61069 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Usf1Q61069 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usf1Q61069 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC20.49■□□□□ 0.87
Usf1Q61069 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Usf1Q61069 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Usf1Q61069 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Usf1Q61069 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usf1Q61069 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Usf1Q61069 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Usf1Q61069 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usf1Q61069 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usf1Q61069 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usf1Q61069 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Usf1Q61069 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usf1Q61069 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usf1Q61069 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usf1Q61069 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usf1Q61069 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC20.45■□□□□ 0.86
Usf1Q61069 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Usf1Q61069 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usf1Q61069 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Usf1Q61069 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usf1Q61069 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Usf1Q61069 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Usf1Q61069 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usf1Q61069 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC20.44■□□□□ 0.86
Usf1Q61069 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usf1Q61069 Gm5131-201ENSMUST00000212776 1238 ntBASIC20.43■□□□□ 0.86
Usf1Q61069 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usf1Q61069 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC20.43■□□□□ 0.86
Usf1Q61069 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usf1Q61069 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usf1Q61069 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usf1Q61069 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usf1Q61069 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Usf1Q61069 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Usf1Q61069 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usf1Q61069 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usf1Q61069 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usf1Q61069 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC20.41■□□□□ 0.86
Usf1Q61069 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usf1Q61069 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usf1Q61069 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC20.4■□□□□ 0.86
Usf1Q61069 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usf1Q61069 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC20.4■□□□□ 0.86
Usf1Q61069 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms