Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nr1h4Q60641 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nr1h4Q60641 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Nr1h4Q60641 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC21.12■□□□□ 0.97
Nr1h4Q60641 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nr1h4Q60641 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Nr1h4Q60641 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nr1h4Q60641 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Nr1h4Q60641 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nr1h4Q60641 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nr1h4Q60641 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nr1h4Q60641 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nr1h4Q60641 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC21.11■□□□□ 0.97
Nr1h4Q60641 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
Nr1h4Q60641 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Nr1h4Q60641 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Nr1h4Q60641 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Nr1h4Q60641 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Nr1h4Q60641 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC21.1■□□□□ 0.97
Nr1h4Q60641 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC21.1■□□□□ 0.97
Nr1h4Q60641 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Nr1h4Q60641 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Nr1h4Q60641 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nr1h4Q60641 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nr1h4Q60641 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC21.09■□□□□ 0.97
Nr1h4Q60641 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC21.09■□□□□ 0.97
Nr1h4Q60641 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nr1h4Q60641 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nr1h4Q60641 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Nr1h4Q60641 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Nr1h4Q60641 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Nr1h4Q60641 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nr1h4Q60641 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Nr1h4Q60641 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nr1h4Q60641 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nr1h4Q60641 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Nr1h4Q60641 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nr1h4Q60641 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC21.06■□□□□ 0.96
Nr1h4Q60641 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Nr1h4Q60641 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nr1h4Q60641 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nr1h4Q60641 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Nr1h4Q60641 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nr1h4Q60641 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Nr1h4Q60641 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC21.05■□□□□ 0.96
Nr1h4Q60641 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Nr1h4Q60641 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nr1h4Q60641 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Nr1h4Q60641 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Nr1h4Q60641 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nr1h4Q60641 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Nr1h4Q60641 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Nr1h4Q60641 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC21.04■□□□□ 0.96
Nr1h4Q60641 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Nr1h4Q60641 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Nr1h4Q60641 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Nr1h4Q60641 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Nr1h4Q60641 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nr1h4Q60641 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nr1h4Q60641 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nr1h4Q60641 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Nr1h4Q60641 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nr1h4Q60641 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nr1h4Q60641 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nr1h4Q60641 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Nr1h4Q60641 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Nr1h4Q60641 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Nr1h4Q60641 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Nr1h4Q60641 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC21.02■□□□□ 0.96
Nr1h4Q60641 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Nr1h4Q60641 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Nr1h4Q60641 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC21.02■□□□□ 0.95
Nr1h4Q60641 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Nr1h4Q60641 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Nr1h4Q60641 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Nr1h4Q60641 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Nr1h4Q60641 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Nr1h4Q60641 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Nr1h4Q60641 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Nr1h4Q60641 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Nr1h4Q60641 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Nr1h4Q60641 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
Nr1h4Q60641 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC20.99■□□□□ 0.95
Nr1h4Q60641 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Nr1h4Q60641 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Nr1h4Q60641 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Nr1h4Q60641 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Nr1h4Q60641 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Nr1h4Q60641 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Nr1h4Q60641 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Nr1h4Q60641 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Nr1h4Q60641 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Nr1h4Q60641 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Nr1h4Q60641 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Nr1h4Q60641 Gm6934-201ENSMUST00000194780 1905 ntBASIC20.98■□□□□ 0.95
Nr1h4Q60641 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Nr1h4Q60641 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Nr1h4Q60641 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Nr1h4Q60641 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Nr1h4Q60641 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 89 ms