Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Trim40Q3UWA4 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Trim40Q3UWA4 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trim40Q3UWA4 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim40Q3UWA4 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim40Q3UWA4 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
Trim40Q3UWA4 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Trim40Q3UWA4 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
Trim40Q3UWA4 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Trim40Q3UWA4 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Trim40Q3UWA4 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Trim40Q3UWA4 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim40Q3UWA4 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim40Q3UWA4 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.88■□□□□ 0.93
Trim40Q3UWA4 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim40Q3UWA4 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim40Q3UWA4 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim40Q3UWA4 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim40Q3UWA4 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Trim40Q3UWA4 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Trim40Q3UWA4 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Trim40Q3UWA4 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim40Q3UWA4 Gm4419-202ENSMUST00000226239 1431 ntBASIC20.87■□□□□ 0.93
Trim40Q3UWA4 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim40Q3UWA4 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim40Q3UWA4 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim40Q3UWA4 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim40Q3UWA4 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Trim40Q3UWA4 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim40Q3UWA4 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim40Q3UWA4 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim40Q3UWA4 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim40Q3UWA4 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim40Q3UWA4 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim40Q3UWA4 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC20.86■□□□□ 0.93
Trim40Q3UWA4 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC20.86■□□□□ 0.93
Trim40Q3UWA4 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim40Q3UWA4 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim40Q3UWA4 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Trim40Q3UWA4 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim40Q3UWA4 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim40Q3UWA4 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim40Q3UWA4 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim40Q3UWA4 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim40Q3UWA4 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
Trim40Q3UWA4 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim40Q3UWA4 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim40Q3UWA4 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim40Q3UWA4 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim40Q3UWA4 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Trim40Q3UWA4 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Trim40Q3UWA4 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Trim40Q3UWA4 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim40Q3UWA4 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim40Q3UWA4 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Trim40Q3UWA4 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim40Q3UWA4 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim40Q3UWA4 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim40Q3UWA4 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Trim40Q3UWA4 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC20.8■□□□□ 0.92
Trim40Q3UWA4 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Trim40Q3UWA4 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim40Q3UWA4 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim40Q3UWA4 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim40Q3UWA4 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Trim40Q3UWA4 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim40Q3UWA4 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim40Q3UWA4 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Trim40Q3UWA4 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Trim40Q3UWA4 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim40Q3UWA4 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim40Q3UWA4 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trim40Q3UWA4 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Trim40Q3UWA4 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim40Q3UWA4 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Trim40Q3UWA4 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim40Q3UWA4 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim40Q3UWA4 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC20.77■□□□□ 0.92
Trim40Q3UWA4 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim40Q3UWA4 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Trim40Q3UWA4 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
Trim40Q3UWA4 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Trim40Q3UWA4 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim40Q3UWA4 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC20.76■□□□□ 0.91
Trim40Q3UWA4 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC20.76■□□□□ 0.91
Trim40Q3UWA4 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Trim40Q3UWA4 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim40Q3UWA4 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trim40Q3UWA4 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim40Q3UWA4 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim40Q3UWA4 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Trim40Q3UWA4 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim40Q3UWA4 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim40Q3UWA4 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Trim40Q3UWA4 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim40Q3UWA4 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim40Q3UWA4 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim40Q3UWA4 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Trim40Q3UWA4 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
Trim40Q3UWA4 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms