Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Upf3bQ3ULL6 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Upf3bQ3ULL6 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Upf3bQ3ULL6 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Upf3bQ3ULL6 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Upf3bQ3ULL6 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC23.85■■□□□ 1.41
Upf3bQ3ULL6 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Upf3bQ3ULL6 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
Upf3bQ3ULL6 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Upf3bQ3ULL6 Gm44428-201ENSMUST00000204474 874 ntBASIC23.84■■□□□ 1.41
Upf3bQ3ULL6 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Upf3bQ3ULL6 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Upf3bQ3ULL6 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC23.83■■□□□ 1.4
Upf3bQ3ULL6 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC23.83■■□□□ 1.4
Upf3bQ3ULL6 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Upf3bQ3ULL6 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Upf3bQ3ULL6 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC23.82■■□□□ 1.4
Upf3bQ3ULL6 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
Upf3bQ3ULL6 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Upf3bQ3ULL6 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Upf3bQ3ULL6 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Upf3bQ3ULL6 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Upf3bQ3ULL6 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
Upf3bQ3ULL6 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Upf3bQ3ULL6 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Upf3bQ3ULL6 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Upf3bQ3ULL6 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Upf3bQ3ULL6 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Upf3bQ3ULL6 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
Upf3bQ3ULL6 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Upf3bQ3ULL6 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Upf3bQ3ULL6 AC151971.4-201ENSMUST00000214717 704 ntBASIC23.79■■□□□ 1.4
Upf3bQ3ULL6 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC23.79■■□□□ 1.4
Upf3bQ3ULL6 Il17rd-202ENSMUST00000223942 2186 ntBASIC23.79■■□□□ 1.4
Upf3bQ3ULL6 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Upf3bQ3ULL6 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
Upf3bQ3ULL6 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC23.78■■□□□ 1.4
Upf3bQ3ULL6 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC23.78■■□□□ 1.4
Upf3bQ3ULL6 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Upf3bQ3ULL6 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
Upf3bQ3ULL6 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
Upf3bQ3ULL6 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Upf3bQ3ULL6 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC23.76■■□□□ 1.39
Upf3bQ3ULL6 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
Upf3bQ3ULL6 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Upf3bQ3ULL6 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
Upf3bQ3ULL6 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Upf3bQ3ULL6 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC23.75■■□□□ 1.39
Upf3bQ3ULL6 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Upf3bQ3ULL6 Gm27502-201ENSMUST00000183495 199 ntBASIC23.75■■□□□ 1.39
Upf3bQ3ULL6 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC23.75■■□□□ 1.39
Upf3bQ3ULL6 Gm7199-201ENSMUST00000118327 1485 ntBASIC23.75■■□□□ 1.39
Upf3bQ3ULL6 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Upf3bQ3ULL6 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Upf3bQ3ULL6 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC23.74■■□□□ 1.39
Upf3bQ3ULL6 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Upf3bQ3ULL6 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Upf3bQ3ULL6 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Upf3bQ3ULL6 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Upf3bQ3ULL6 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
Upf3bQ3ULL6 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
Upf3bQ3ULL6 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC23.73■■□□□ 1.39
Upf3bQ3ULL6 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Upf3bQ3ULL6 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Upf3bQ3ULL6 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
Upf3bQ3ULL6 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC23.72■■□□□ 1.39
Upf3bQ3ULL6 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC23.72■■□□□ 1.39
Upf3bQ3ULL6 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Upf3bQ3ULL6 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
Upf3bQ3ULL6 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
Upf3bQ3ULL6 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Upf3bQ3ULL6 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC23.7■■□□□ 1.38
Upf3bQ3ULL6 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Upf3bQ3ULL6 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
Upf3bQ3ULL6 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC23.69■■□□□ 1.38
Upf3bQ3ULL6 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Upf3bQ3ULL6 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Upf3bQ3ULL6 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Upf3bQ3ULL6 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Upf3bQ3ULL6 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Upf3bQ3ULL6 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC23.68■■□□□ 1.38
Upf3bQ3ULL6 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Upf3bQ3ULL6 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
Upf3bQ3ULL6 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Upf3bQ3ULL6 AC117769.4-201ENSMUST00000225679 685 ntBASIC23.67■■□□□ 1.38
Upf3bQ3ULL6 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Upf3bQ3ULL6 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Upf3bQ3ULL6 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Upf3bQ3ULL6 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Upf3bQ3ULL6 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC23.66■■□□□ 1.38
Upf3bQ3ULL6 Gm12366-201ENSMUST00000121722 873 ntBASIC23.66■■□□□ 1.38
Upf3bQ3ULL6 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC23.66■■□□□ 1.38
Upf3bQ3ULL6 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC23.66■■□□□ 1.38
Upf3bQ3ULL6 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC23.66■■□□□ 1.38
Upf3bQ3ULL6 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC23.66■■□□□ 1.38
Upf3bQ3ULL6 Gm5786-201ENSMUST00000085368 882 ntBASIC23.66■■□□□ 1.38
Upf3bQ3ULL6 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
Upf3bQ3ULL6 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
Upf3bQ3ULL6 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Upf3bQ3ULL6 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms