Protein–RNA interactions for Protein: P84244

H3f3a, Histone H3.3, mousemouse

Known RBP Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3f3aP84244 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
H3f3aP84244 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
H3f3aP84244 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
H3f3aP84244 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
H3f3aP84244 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
H3f3aP84244 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
H3f3aP84244 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
H3f3aP84244 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
H3f3aP84244 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
H3f3aP84244 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
H3f3aP84244 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
H3f3aP84244 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
H3f3aP84244 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
H3f3aP84244 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
H3f3aP84244 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
H3f3aP84244 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
H3f3aP84244 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
H3f3aP84244 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
H3f3aP84244 Gm7199-201ENSMUST00000118327 1485 ntBASIC19.84■□□□□ 0.77
H3f3aP84244 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
H3f3aP84244 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
H3f3aP84244 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
H3f3aP84244 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
H3f3aP84244 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
H3f3aP84244 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
H3f3aP84244 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
H3f3aP84244 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
H3f3aP84244 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
H3f3aP84244 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
H3f3aP84244 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
H3f3aP84244 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
H3f3aP84244 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
H3f3aP84244 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC19.81■□□□□ 0.76
H3f3aP84244 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
H3f3aP84244 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
H3f3aP84244 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC19.81■□□□□ 0.76
H3f3aP84244 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
H3f3aP84244 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
H3f3aP84244 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
H3f3aP84244 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
H3f3aP84244 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
H3f3aP84244 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
H3f3aP84244 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
H3f3aP84244 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
H3f3aP84244 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC19.79■□□□□ 0.76
H3f3aP84244 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
H3f3aP84244 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC19.79■□□□□ 0.76
H3f3aP84244 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
H3f3aP84244 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
H3f3aP84244 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
H3f3aP84244 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
H3f3aP84244 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC19.77■□□□□ 0.76
H3f3aP84244 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
H3f3aP84244 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
H3f3aP84244 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
H3f3aP84244 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
H3f3aP84244 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
H3f3aP84244 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
H3f3aP84244 Il17rd-202ENSMUST00000223942 2186 ntBASIC19.76■□□□□ 0.75
H3f3aP84244 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
H3f3aP84244 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC19.75■□□□□ 0.75
H3f3aP84244 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
H3f3aP84244 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
H3f3aP84244 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
H3f3aP84244 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
H3f3aP84244 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
H3f3aP84244 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
H3f3aP84244 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
H3f3aP84244 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
H3f3aP84244 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
H3f3aP84244 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC19.74■□□□□ 0.75
H3f3aP84244 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
H3f3aP84244 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
H3f3aP84244 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
H3f3aP84244 Gm14523-201ENSMUST00000117260 558 ntBASIC19.73■□□□□ 0.75
H3f3aP84244 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC19.73■□□□□ 0.75
H3f3aP84244 Gm12366-201ENSMUST00000121722 873 ntBASIC19.73■□□□□ 0.75
H3f3aP84244 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC19.73■□□□□ 0.75
H3f3aP84244 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC19.73■□□□□ 0.75
H3f3aP84244 Gm27502-201ENSMUST00000183495 199 ntBASIC19.73■□□□□ 0.75
H3f3aP84244 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC19.73■□□□□ 0.75
H3f3aP84244 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
H3f3aP84244 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC19.73■□□□□ 0.75
H3f3aP84244 Gm5786-201ENSMUST00000085368 882 ntBASIC19.73■□□□□ 0.75
H3f3aP84244 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
H3f3aP84244 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC19.72■□□□□ 0.75
H3f3aP84244 AC117769.4-201ENSMUST00000225679 685 ntBASIC19.72■□□□□ 0.75
H3f3aP84244 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
H3f3aP84244 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
H3f3aP84244 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
H3f3aP84244 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
H3f3aP84244 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
H3f3aP84244 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
H3f3aP84244 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
H3f3aP84244 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
H3f3aP84244 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
H3f3aP84244 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
H3f3aP84244 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC19.7■□□□□ 0.74
H3f3aP84244 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC19.7■□□□□ 0.74
H3f3aP84244 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 13.5 ms