Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Sox3P53784 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Sox3P53784 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Sox3P53784 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Sox3P53784 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Sox3P53784 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Sox3P53784 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Sox3P53784 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Sox3P53784 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Sox3P53784 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Sox3P53784 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Sox3P53784 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC21.16■□□□□ 0.98
Sox3P53784 AC122317.2-201ENSMUST00000218708 1248 ntBASIC21.16■□□□□ 0.98
Sox3P53784 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Sox3P53784 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Sox3P53784 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Sox3P53784 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Sox3P53784 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Sox3P53784 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Sox3P53784 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC21.14■□□□□ 0.97
Sox3P53784 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC21.14■□□□□ 0.97
Sox3P53784 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC21.14■□□□□ 0.97
Sox3P53784 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Sox3P53784 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Sox3P53784 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Sox3P53784 Gm15820-201ENSMUST00000201566 728 ntBASIC21.13■□□□□ 0.97
Sox3P53784 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Sox3P53784 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Sox3P53784 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC21.12■□□□□ 0.97
Sox3P53784 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Sox3P53784 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC21.11■□□□□ 0.97
Sox3P53784 Gm14117-201ENSMUST00000122417 843 ntBASIC21.11■□□□□ 0.97
Sox3P53784 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Sox3P53784 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Sox3P53784 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Sox3P53784 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Sox3P53784 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Sox3P53784 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Sox3P53784 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC21.1■□□□□ 0.97
Sox3P53784 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
Sox3P53784 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Sox3P53784 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
Sox3P53784 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Sox3P53784 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Sox3P53784 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Sox3P53784 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Sox3P53784 AC153911.1-201ENSMUST00000220378 758 ntBASIC21.09■□□□□ 0.97
Sox3P53784 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Sox3P53784 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Sox3P53784 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Sox3P53784 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Sox3P53784 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Sox3P53784 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC21.09■□□□□ 0.97
Sox3P53784 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
Sox3P53784 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
Sox3P53784 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC21.08■□□□□ 0.97
Sox3P53784 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Sox3P53784 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC21.08■□□□□ 0.97
Sox3P53784 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Sox3P53784 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Sox3P53784 Gm17641-201ENSMUST00000166328 2350 ntBASIC21.07■□□□□ 0.96
Sox3P53784 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC21.07■□□□□ 0.96
Sox3P53784 Gm13238-201ENSMUST00000117655 780 ntBASIC21.07■□□□□ 0.96
Sox3P53784 Gm43566-201ENSMUST00000196851 808 ntBASIC21.07■□□□□ 0.96
Sox3P53784 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Sox3P53784 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC21.07■□□□□ 0.96
Sox3P53784 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Sox3P53784 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Sox3P53784 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Sox3P53784 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Sox3P53784 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC21.06■□□□□ 0.96
Sox3P53784 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Sox3P53784 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Sox3P53784 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Sox3P53784 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Sox3P53784 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Sox3P53784 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Sox3P53784 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Sox3P53784 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Sox3P53784 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Sox3P53784 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Sox3P53784 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Sox3P53784 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
Sox3P53784 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
Sox3P53784 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Sox3P53784 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Sox3P53784 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Sox3P53784 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC21.04■□□□□ 0.96
Sox3P53784 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
Sox3P53784 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC21.03■□□□□ 0.96
Sox3P53784 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Sox3P53784 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Sox3P53784 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Sox3P53784 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Sox3P53784 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Sox3P53784 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Sox3P53784 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC21.02■□□□□ 0.96
Sox3P53784 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC21.02■□□□□ 0.96
Sox3P53784 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.95
Sox3P53784 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 55.6 ms