Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Lire1P11260 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Lire1P11260 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Lire1P11260 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Lire1P11260 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Lire1P11260 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
Lire1P11260 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Lire1P11260 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Lire1P11260 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Lire1P11260 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
Lire1P11260 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC20.75■□□□□ 0.91
Lire1P11260 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Lire1P11260 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Lire1P11260 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Lire1P11260 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Lire1P11260 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Lire1P11260 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Lire1P11260 AC124392.1-201ENSMUST00000225172 5324 ntBASIC20.74■□□□□ 0.91
Lire1P11260 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Lire1P11260 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Lire1P11260 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC20.74■□□□□ 0.91
Lire1P11260 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Lire1P11260 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Lire1P11260 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Lire1P11260 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Lire1P11260 Gm13042-201ENSMUST00000119244 1955 ntBASIC20.73■□□□□ 0.91
Lire1P11260 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC20.73■□□□□ 0.91
Lire1P11260 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Lire1P11260 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Lire1P11260 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lire1P11260 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lire1P11260 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Lire1P11260 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lire1P11260 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lire1P11260 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Lire1P11260 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lire1P11260 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lire1P11260 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.71■□□□□ 0.91
Lire1P11260 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Lire1P11260 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lire1P11260 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lire1P11260 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.9
Lire1P11260 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lire1P11260 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lire1P11260 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lire1P11260 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lire1P11260 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC20.7■□□□□ 0.9
Lire1P11260 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lire1P11260 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Lire1P11260 AC154454.1-201ENSMUST00000225253 216 ntBASIC20.69■□□□□ 0.9
Lire1P11260 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lire1P11260 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lire1P11260 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lire1P11260 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lire1P11260 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lire1P11260 Gm11687-201ENSMUST00000118911 886 ntBASIC20.68■□□□□ 0.9
Lire1P11260 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Lire1P11260 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC20.68■□□□□ 0.9
Lire1P11260 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Lire1P11260 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Lire1P11260 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Lire1P11260 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Lire1P11260 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Lire1P11260 Gm9806-201ENSMUST00000051080 552 ntBASIC20.67■□□□□ 0.9
Lire1P11260 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Lire1P11260 Scarna2-201ENSMUST00000157560 414 ntBASIC20.66■□□□□ 0.9
Lire1P11260 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Lire1P11260 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC20.66■□□□□ 0.9
Lire1P11260 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lire1P11260 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lire1P11260 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC20.65■□□□□ 0.9
Lire1P11260 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Lire1P11260 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC20.65■□□□□ 0.9
Lire1P11260 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
Lire1P11260 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lire1P11260 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Lire1P11260 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
Lire1P11260 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Lire1P11260 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Lire1P11260 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC20.64■□□□□ 0.89
Lire1P11260 Gm4799-201ENSMUST00000095396 657 ntBASIC20.64■□□□□ 0.89
Lire1P11260 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Lire1P11260 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lire1P11260 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC20.63■□□□□ 0.89
Lire1P11260 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Lire1P11260 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lire1P11260 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Lire1P11260 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lire1P11260 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Lire1P11260 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lire1P11260 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC20.62■□□□□ 0.89
Lire1P11260 Gm12366-201ENSMUST00000121722 873 ntBASIC20.62■□□□□ 0.89
Lire1P11260 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC20.62■□□□□ 0.89
Lire1P11260 Pkd1-207ENSMUST00000228550 1050 ntBASIC20.62■□□□□ 0.89
Lire1P11260 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC20.62■□□□□ 0.89
Lire1P11260 Gm5786-201ENSMUST00000085368 882 ntBASIC20.62■□□□□ 0.89
Lire1P11260 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Lire1P11260 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC20.62■□□□□ 0.89
Lire1P11260 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Lire1P11260 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC20.61■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms