Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Clk4O35493 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Clk4O35493 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Clk4O35493 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Clk4O35493 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Clk4O35493 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Clk4O35493 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Clk4O35493 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Clk4O35493 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Clk4O35493 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Clk4O35493 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Clk4O35493 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC21.23■□□□□ 0.99
Clk4O35493 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Clk4O35493 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Clk4O35493 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC21.22■□□□□ 0.99
Clk4O35493 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Clk4O35493 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Clk4O35493 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Clk4O35493 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Clk4O35493 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Clk4O35493 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
Clk4O35493 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Clk4O35493 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Clk4O35493 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Clk4O35493 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.99
Clk4O35493 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Clk4O35493 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Clk4O35493 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Clk4O35493 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Clk4O35493 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Clk4O35493 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC21.2■□□□□ 0.98
Clk4O35493 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Clk4O35493 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Clk4O35493 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
Clk4O35493 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Clk4O35493 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC21.19■□□□□ 0.98
Clk4O35493 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
Clk4O35493 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clk4O35493 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Clk4O35493 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clk4O35493 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clk4O35493 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clk4O35493 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clk4O35493 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clk4O35493 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Clk4O35493 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Clk4O35493 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Clk4O35493 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Clk4O35493 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
Clk4O35493 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Clk4O35493 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Clk4O35493 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC21.16■□□□□ 0.98
Clk4O35493 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Clk4O35493 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC21.15■□□□□ 0.98
Clk4O35493 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC21.15■□□□□ 0.98
Clk4O35493 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Clk4O35493 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Clk4O35493 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Clk4O35493 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC21.14■□□□□ 0.97
Clk4O35493 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Clk4O35493 Gm44428-201ENSMUST00000204474 874 ntBASIC21.14■□□□□ 0.97
Clk4O35493 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC21.14■□□□□ 0.97
Clk4O35493 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Clk4O35493 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Clk4O35493 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Clk4O35493 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Clk4O35493 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Clk4O35493 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Clk4O35493 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC21.12■□□□□ 0.97
Clk4O35493 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
Clk4O35493 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
Clk4O35493 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Clk4O35493 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Clk4O35493 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Clk4O35493 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Clk4O35493 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC21.11■□□□□ 0.97
Clk4O35493 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Clk4O35493 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Clk4O35493 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Clk4O35493 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Clk4O35493 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC21.1■□□□□ 0.97
Clk4O35493 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC21.1■□□□□ 0.97
Clk4O35493 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Clk4O35493 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
Clk4O35493 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Clk4O35493 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Clk4O35493 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Clk4O35493 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Clk4O35493 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Clk4O35493 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
Clk4O35493 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Clk4O35493 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC21.08■□□□□ 0.97
Clk4O35493 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Clk4O35493 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Clk4O35493 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Clk4O35493 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Clk4O35493 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC21.07■□□□□ 0.96
Clk4O35493 Gm42699-201ENSMUST00000198104 1657 ntBASIC21.07■□□□□ 0.96
Clk4O35493 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC21.07■□□□□ 0.96
Clk4O35493 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms