Protein–RNA interactions for Protein: Q3UAW9

Brf2, Transcription factor IIIB 50 kDa subunit, mousemouse

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf2Q3UAW9 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Brf2Q3UAW9 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Brf2Q3UAW9 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Brf2Q3UAW9 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Brf2Q3UAW9 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
Brf2Q3UAW9 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Brf2Q3UAW9 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Brf2Q3UAW9 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Brf2Q3UAW9 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Brf2Q3UAW9 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Brf2Q3UAW9 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Brf2Q3UAW9 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Brf2Q3UAW9 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Brf2Q3UAW9 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Brf2Q3UAW9 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Brf2Q3UAW9 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Brf2Q3UAW9 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Brf2Q3UAW9 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Brf2Q3UAW9 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC14.02□□□□□ -0.16
Brf2Q3UAW9 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Brf2Q3UAW9 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf2Q3UAW9 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Mir5126-201ENSMUST00000175513 77 ntBASIC14.02□□□□□ -0.17
Brf2Q3UAW9 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Gm15590-201ENSMUST00000078419 552 ntBASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Brf2Q3UAW9 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 AC130669.1-201ENSMUST00000228537 1672 ntBASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 AC119177.1-201ENSMUST00000227647 1332 ntBASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Gm9449-201ENSMUST00000207265 1011 ntBASIC14.01□□□□□ -0.17
Brf2Q3UAW9 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 AC164567.1-201ENSMUST00000219185 960 ntBASIC14.01□□□□□ -0.17
Brf2Q3UAW9 AC131709.1-201ENSMUST00000224731 1180 ntBASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Brf2Q3UAW9 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Brf2Q3UAW9 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Brf2Q3UAW9 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Brf2Q3UAW9 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Brf2Q3UAW9 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Brf2Q3UAW9 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Brf2Q3UAW9 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Brf2Q3UAW9 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC14□□□□□ -0.17
Brf2Q3UAW9 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Brf2Q3UAW9 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Brf2Q3UAW9 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Brf2Q3UAW9 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Brf2Q3UAW9 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Brf2Q3UAW9 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Brf2Q3UAW9 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 54.5 ms