Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Ddx56Q9D0R4 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ddx56Q9D0R4 Gm14140-201ENSMUST00000119999 995 ntBASIC15.67■□□□□ 0.1
Ddx56Q9D0R4 Gm15593-201ENSMUST00000122085 1008 ntBASIC15.67■□□□□ 0.1
Ddx56Q9D0R4 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC15.67■□□□□ 0.1
Ddx56Q9D0R4 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Ddx56Q9D0R4 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC15.67■□□□□ 0.1
Ddx56Q9D0R4 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ddx56Q9D0R4 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ddx56Q9D0R4 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ddx56Q9D0R4 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ddx56Q9D0R4 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC15.67■□□□□ 0.1
Ddx56Q9D0R4 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC15.67■□□□□ 0.1
Ddx56Q9D0R4 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Ddx56Q9D0R4 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ddx56Q9D0R4 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
Ddx56Q9D0R4 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ddx56Q9D0R4 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ddx56Q9D0R4 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Psmb5-202ENSMUST00000227257 622 ntBASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ddx56Q9D0R4 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Gm2272-201ENSMUST00000194903 582 ntBASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ddx56Q9D0R4 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Gm38058-201ENSMUST00000194323 4368 ntBASIC15.64■□□□□ 0.09
Ddx56Q9D0R4 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Ddx56Q9D0R4 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ddx56Q9D0R4 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Ddx56Q9D0R4 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ddx56Q9D0R4 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ddx56Q9D0R4 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ddx56Q9D0R4 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC15.63■□□□□ 0.09
Ddx56Q9D0R4 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ddx56Q9D0R4 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms