Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Smc1aQ9CU62 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Gm5648-201ENSMUST00000122244 1587 ntBASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Gm4913-201ENSMUST00000117075 1290 ntBASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Smc1aQ9CU62 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Gm5682-201ENSMUST00000173402 505 ntBASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 AC117588.1-201ENSMUST00000228510 999 ntBASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC16.68■□□□□ 0.26
Smc1aQ9CU62 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Gm45504-201ENSMUST00000211407 2107 ntBASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Gm38327-201ENSMUST00000195852 1755 ntBASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Gm5253-201ENSMUST00000187104 1025 ntBASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 AC131709.1-201ENSMUST00000224731 1180 ntBASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Smc1aQ9CU62 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 42.3 ms