Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Brf1Q8CFK2 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Brf1Q8CFK2 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Brf1Q8CFK2 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Brf1Q8CFK2 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Brf1Q8CFK2 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Brf1Q8CFK2 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Brf1Q8CFK2 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
Brf1Q8CFK2 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Gm12892-201ENSMUST00000117367 1146 ntBASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Mir8117-201ENSMUST00000184773 107 ntBASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Gm8000-201ENSMUST00000188378 592 ntBASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Gm5712-201ENSMUST00000199748 1043 ntBASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Brf1Q8CFK2 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC17.98■□□□□ 0.47
Brf1Q8CFK2 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Brf1Q8CFK2 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Brf1Q8CFK2 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Brf1Q8CFK2 AC131743.5-201ENSMUST00000220775 1618 ntBASIC17.98■□□□□ 0.47
Brf1Q8CFK2 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Brf1Q8CFK2 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Brf1Q8CFK2 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Brf1Q8CFK2 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC17.98■□□□□ 0.47
Brf1Q8CFK2 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC17.98■□□□□ 0.47
Brf1Q8CFK2 Gm45683-201ENSMUST00000210825 1247 ntBASIC17.98■□□□□ 0.47
Brf1Q8CFK2 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Brf1Q8CFK2 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Brf1Q8CFK2 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Brf1Q8CFK2 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Brf1Q8CFK2 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Brf1Q8CFK2 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Brf1Q8CFK2 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC17.98■□□□□ 0.47
Brf1Q8CFK2 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Brf1Q8CFK2 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC17.98■□□□□ 0.47
Brf1Q8CFK2 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC17.98■□□□□ 0.47
Brf1Q8CFK2 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Gm42632-201ENSMUST00000201707 2411 ntBASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Gm10175-201ENSMUST00000086013 645 ntBASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Brf1Q8CFK2 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 52.9 ms