Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Clrn3Q8BHH8 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
Clrn3Q8BHH8 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clrn3Q8BHH8 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Gm6184-201ENSMUST00000120403 1261 ntBASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Gm5049-201ENSMUST00000195878 1590 ntBASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Gm21451-201ENSMUST00000111062 2775 ntBASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Clrn3Q8BHH8 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Gm18733-201ENSMUST00000173950 856 ntBASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Mir5126-201ENSMUST00000175513 77 ntBASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Mzt1-203ENSMUST00000227948 952 ntBASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Clrn3Q8BHH8 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Clrn3Q8BHH8 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Clrn3Q8BHH8 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Clrn3Q8BHH8 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Clrn3Q8BHH8 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Clrn3Q8BHH8 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Clrn3Q8BHH8 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Clrn3Q8BHH8 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Clrn3Q8BHH8 Gm13036-201ENSMUST00000117799 748 ntBASIC14.02□□□□□ -0.17
Clrn3Q8BHH8 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC14.02□□□□□ -0.17
Clrn3Q8BHH8 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Clrn3Q8BHH8 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC14.02□□□□□ -0.17
Clrn3Q8BHH8 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Clrn3Q8BHH8 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Clrn3Q8BHH8 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Clrn3Q8BHH8 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC14.02□□□□□ -0.17
Clrn3Q8BHH8 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Clrn3Q8BHH8 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Clrn3Q8BHH8 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Clrn3Q8BHH8 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Clrn3Q8BHH8 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Clrn3Q8BHH8 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Clrn3Q8BHH8 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Clrn3Q8BHH8 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Clrn3Q8BHH8 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Clrn3Q8BHH8 Gm45293-201ENSMUST00000209754 1812 ntBASIC14.01□□□□□ -0.17
Clrn3Q8BHH8 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Clrn3Q8BHH8 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Clrn3Q8BHH8 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC14.01□□□□□ -0.17
Clrn3Q8BHH8 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Clrn3Q8BHH8 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Clrn3Q8BHH8 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Clrn3Q8BHH8 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Clrn3Q8BHH8 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Clrn3Q8BHH8 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Clrn3Q8BHH8 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms