Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Sox1P53783 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sox1P53783 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Sox1P53783 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
Sox1P53783 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 AC131743.5-201ENSMUST00000220775 1618 ntBASIC15.15■□□□□ 0.02
Sox1P53783 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC15.15■□□□□ 0.02
Sox1P53783 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC15.15■□□□□ 0.02
Sox1P53783 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
Sox1P53783 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC15.15■□□□□ 0.02
Sox1P53783 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Gm43548-201ENSMUST00000197139 2353 ntBASIC15.15■□□□□ 0.02
Sox1P53783 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Gm5912-201ENSMUST00000122282 1438 ntBASIC15.15■□□□□ 0.02
Sox1P53783 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC15.15■□□□□ 0.02
Sox1P53783 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC15.15■□□□□ 0.02
Sox1P53783 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Sox1P53783 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Gm13337-201ENSMUST00000119183 1594 ntBASIC15.15■□□□□ 0.02
Sox1P53783 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC15.15■□□□□ 0.02
Sox1P53783 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox1P53783 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox1P53783 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox1P53783 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Sox1P53783 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox1P53783 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Sox1P53783 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox1P53783 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Sox1P53783 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox1P53783 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox1P53783 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox1P53783 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox1P53783 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox1P53783 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Sox1P53783 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC15.14■□□□□ 0.01
Sox1P53783 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox1P53783 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC15.14■□□□□ 0.01
Sox1P53783 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC15.14■□□□□ 0.01
Sox1P53783 Gm27631-201ENSMUST00000184163 466 ntBASIC15.14■□□□□ 0.01
Sox1P53783 Mir7654-201ENSMUST00000185082 70 ntBASIC15.14■□□□□ 0.01
Sox1P53783 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox1P53783 Gm18934-201ENSMUST00000216671 1044 ntBASIC15.14■□□□□ 0.01
Sox1P53783 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox1P53783 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC15.14■□□□□ 0.01
Sox1P53783 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC15.14■□□□□ 0.01
Sox1P53783 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Sox1P53783 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox1P53783 Zkscan3-208ENSMUST00000224820 5398 ntBASIC15.14■□□□□ 0.01
Sox1P53783 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox1P53783 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC15.14■□□□□ 0.01
Sox1P53783 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox1P53783 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sox1P53783 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox1P53783 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox1P53783 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC15.13■□□□□ 0.01
Sox1P53783 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox1P53783 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Sox1P53783 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC15.13■□□□□ 0.01
Sox1P53783 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox1P53783 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox1P53783 Gm23931-201ENSMUST00000103842 109 ntBASIC15.13■□□□□ 0.01
Sox1P53783 Gm7584-201ENSMUST00000175829 940 ntBASIC15.13■□□□□ 0.01
Sox1P53783 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
Sox1P53783 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Sox1P53783 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Sox1P53783 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox1P53783 Gm17794-201ENSMUST00000220252 955 ntBASIC15.13■□□□□ 0.01
Sox1P53783 Gm7446-201ENSMUST00000221035 1240 ntBASIC15.13■□□□□ 0.01
Sox1P53783 AC154846.1-201ENSMUST00000226278 862 ntBASIC15.13■□□□□ 0.01
Sox1P53783 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox1P53783 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox1P53783 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox1P53783 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox1P53783 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox1P53783 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox1P53783 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sox1P53783 Zscan30-202ENSMUST00000224144 1458 ntBASIC15.13■□□□□ 0.01
Sox1P53783 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Sox1P53783 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC15.12■□□□□ 0.01
Sox1P53783 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Sox1P53783 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms