Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Sdc1P18828 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sdc1P18828 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sdc1P18828 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sdc1P18828 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Sdc1P18828 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Sdc1P18828 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC12.25□□□□□ -0.45
Sdc1P18828 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC12.25□□□□□ -0.45
Sdc1P18828 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC12.25□□□□□ -0.45
Sdc1P18828 Gm7556-201ENSMUST00000201178 1084 ntBASIC12.25□□□□□ -0.45
Sdc1P18828 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sdc1P18828 Gm16042-201ENSMUST00000204813 1247 ntBASIC12.25□□□□□ -0.45
Sdc1P18828 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC12.25□□□□□ -0.45
Sdc1P18828 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sdc1P18828 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC12.25□□□□□ -0.45
Sdc1P18828 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sdc1P18828 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sdc1P18828 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC12.25□□□□□ -0.45
Sdc1P18828 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Sdc1P18828 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sdc1P18828 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC12.25□□□□□ -0.45
Sdc1P18828 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
Sdc1P18828 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sdc1P18828 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sdc1P18828 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sdc1P18828 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sdc1P18828 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Sdc1P18828 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sdc1P18828 Gm37844-201ENSMUST00000192473 4097 ntBASIC12.25□□□□□ -0.45
Sdc1P18828 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sdc1P18828 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sdc1P18828 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sdc1P18828 Gm6198-201ENSMUST00000191337 2929 ntBASIC12.24□□□□□ -0.45
Sdc1P18828 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sdc1P18828 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sdc1P18828 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Sdc1P18828 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sdc1P18828 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sdc1P18828 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sdc1P18828 Gm10052-201ENSMUST00000168019 960 ntBASIC12.24□□□□□ -0.45
Sdc1P18828 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sdc1P18828 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Sdc1P18828 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sdc1P18828 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sdc1P18828 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC12.24□□□□□ -0.45
Sdc1P18828 Gm42872-201ENSMUST00000200026 1967 ntBASIC12.24□□□□□ -0.45
Sdc1P18828 Gm44430-201ENSMUST00000203376 995 ntBASIC12.24□□□□□ -0.45
Sdc1P18828 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC12.24□□□□□ -0.45
Sdc1P18828 CT009713.7-201ENSMUST00000224689 571 ntBASIC12.24□□□□□ -0.45
Sdc1P18828 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sdc1P18828 Gm7729-201ENSMUST00000050143 801 ntBASIC12.24□□□□□ -0.45
Sdc1P18828 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sdc1P18828 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sdc1P18828 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sdc1P18828 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sdc1P18828 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sdc1P18828 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sdc1P18828 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sdc1P18828 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sdc1P18828 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sdc1P18828 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sdc1P18828 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sdc1P18828 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sdc1P18828 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sdc1P18828 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sdc1P18828 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sdc1P18828 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sdc1P18828 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Sdc1P18828 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sdc1P18828 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC12.23□□□□□ -0.45
Sdc1P18828 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC12.23□□□□□ -0.45
Sdc1P18828 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
Sdc1P18828 AC160980.1-201ENSMUST00000224136 970 ntBASIC12.23□□□□□ -0.45
Sdc1P18828 AC175538.1-201ENSMUST00000225343 1269 ntBASIC12.23□□□□□ -0.45
Sdc1P18828 Slc35b2-207ENSMUST00000226086 850 ntBASIC12.23□□□□□ -0.45
Sdc1P18828 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sdc1P18828 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sdc1P18828 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sdc1P18828 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sdc1P18828 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sdc1P18828 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sdc1P18828 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sdc1P18828 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sdc1P18828 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sdc1P18828 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC12.23□□□□□ -0.45
Sdc1P18828 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Sdc1P18828 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sdc1P18828 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sdc1P18828 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Sdc1P18828 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC12.22□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms