Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Rfx3P48381 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
Rfx3P48381 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Rfx3P48381 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Rfx3P48381 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Rfx3P48381 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Rfx3P48381 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Rfx3P48381 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Rfx3P48381 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Rfx3P48381 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Rfx3P48381 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC13.52□□□□□ -0.24
Rfx3P48381 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
Rfx3P48381 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Rfx3P48381 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Rfx3P48381 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
Rfx3P48381 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.25
Rfx3P48381 Gm37584-201ENSMUST00000193595 1290 ntBASIC13.52□□□□□ -0.25
Rfx3P48381 Gm7556-201ENSMUST00000201178 1084 ntBASIC13.52□□□□□ -0.25
Rfx3P48381 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC13.52□□□□□ -0.25
Rfx3P48381 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Rfx3P48381 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Rfx3P48381 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Rfx3P48381 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Rfx3P48381 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Rfx3P48381 Gm5049-201ENSMUST00000195878 1590 ntBASIC13.52□□□□□ -0.25
Rfx3P48381 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Rfx3P48381 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Rfx3P48381 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Rfx3P48381 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Rfx3P48381 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Rfx3P48381 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Rfx3P48381 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Rfx3P48381 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Rfx3P48381 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Rfx3P48381 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Rfx3P48381 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Rfx3P48381 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx3P48381 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx3P48381 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx3P48381 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx3P48381 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx3P48381 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx3P48381 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx3P48381 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC13.51□□□□□ -0.25
Rfx3P48381 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC13.51□□□□□ -0.25
Rfx3P48381 Gm4535-201ENSMUST00000182274 558 ntBASIC13.51□□□□□ -0.25
Rfx3P48381 Gm43347-201ENSMUST00000200226 580 ntBASIC13.51□□□□□ -0.25
Rfx3P48381 Gm30437-201ENSMUST00000206086 1201 ntBASIC13.51□□□□□ -0.25
Rfx3P48381 AC122024.2-201ENSMUST00000220086 871 ntBASIC13.51□□□□□ -0.25
Rfx3P48381 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Rfx3P48381 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx3P48381 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
Rfx3P48381 Gm10355-201ENSMUST00000097146 517 ntBASIC13.51□□□□□ -0.25
Rfx3P48381 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC13.51□□□□□ -0.25
Rfx3P48381 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC13.51□□□□□ -0.25
Rfx3P48381 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx3P48381 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx3P48381 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx3P48381 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx3P48381 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Rfx3P48381 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx3P48381 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Rfx3P48381 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Rfx3P48381 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx3P48381 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx3P48381 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx3P48381 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Rfx3P48381 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx3P48381 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx3P48381 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx3P48381 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx3P48381 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx3P48381 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC13.5□□□□□ -0.25
Rfx3P48381 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx3P48381 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx3P48381 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx3P48381 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx3P48381 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx3P48381 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC13.5□□□□□ -0.25
Rfx3P48381 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Rfx3P48381 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC13.5□□□□□ -0.25
Rfx3P48381 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC13.5□□□□□ -0.25
Rfx3P48381 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx3P48381 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx3P48381 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx3P48381 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC13.5□□□□□ -0.25
Rfx3P48381 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx3P48381 Birc2-201ENSMUST00000054878 378 ntBASIC13.5□□□□□ -0.25
Rfx3P48381 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx3P48381 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
Rfx3P48381 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Rfx3P48381 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx3P48381 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx3P48381 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC13.5□□□□□ -0.25
Rfx3P48381 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx3P48381 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx3P48381 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC13.5□□□□□ -0.25
Rfx3P48381 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx3P48381 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Rfx3P48381 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC13.5□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms