Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Clk3O35492 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC14.25□□□□□ -0.13
Clk3O35492 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC14.25□□□□□ -0.13
Clk3O35492 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Clk3O35492 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC14.25□□□□□ -0.13
Clk3O35492 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Clk3O35492 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Clk3O35492 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC14.25□□□□□ -0.13
Clk3O35492 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk3O35492 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clk3O35492 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Clk3O35492 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC14.24□□□□□ -0.13
Clk3O35492 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clk3O35492 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clk3O35492 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clk3O35492 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clk3O35492 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clk3O35492 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clk3O35492 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clk3O35492 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Clk3O35492 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clk3O35492 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clk3O35492 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC14.24□□□□□ -0.13
Clk3O35492 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Clk3O35492 Gm5864-201ENSMUST00000202263 970 ntBASIC14.24□□□□□ -0.13
Clk3O35492 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC14.24□□□□□ -0.13
Clk3O35492 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Clk3O35492 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clk3O35492 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clk3O35492 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Clk3O35492 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC14.24□□□□□ -0.13
Clk3O35492 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clk3O35492 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clk3O35492 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clk3O35492 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clk3O35492 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clk3O35492 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Clk3O35492 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clk3O35492 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Clk3O35492 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Clk3O35492 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Clk3O35492 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Clk3O35492 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Clk3O35492 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Clk3O35492 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Clk3O35492 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Clk3O35492 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Clk3O35492 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Clk3O35492 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Clk3O35492 Gm11452-201ENSMUST00000122376 690 ntBASIC14.23□□□□□ -0.13
Clk3O35492 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Clk3O35492 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Clk3O35492 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC14.23□□□□□ -0.13
Clk3O35492 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
Clk3O35492 Gm18195-201ENSMUST00000207604 706 ntBASIC14.23□□□□□ -0.13
Clk3O35492 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
Clk3O35492 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Clk3O35492 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC14.23□□□□□ -0.13
Clk3O35492 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Clk3O35492 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Clk3O35492 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Clk3O35492 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC14.23□□□□□ -0.13
Clk3O35492 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Clk3O35492 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Clk3O35492 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Clk3O35492 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Clk3O35492 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Clk3O35492 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Clk3O35492 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Clk3O35492 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Clk3O35492 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Clk3O35492 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Clk3O35492 Gm5049-201ENSMUST00000195878 1590 ntBASIC14.22□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms