Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Gm45293-201ENSMUST00000209754 1812 ntBASIC14.18□□□□□ -0.14
Use1Q9CQ56 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Celf4-206ENSMUST00000224553 1729 ntBASIC14.18□□□□□ -0.14
Use1Q9CQ56 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Use1Q9CQ56 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Rbfox2-207ENSMUST00000227533 1041 ntBASIC14.17□□□□□ -0.14
Use1Q9CQ56 CT009510.1-201ENSMUST00000227972 270 ntBASIC14.17□□□□□ -0.14
Use1Q9CQ56 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Gm7901-201ENSMUST00000120430 1597 ntBASIC14.17□□□□□ -0.14
Use1Q9CQ56 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Use1Q9CQ56 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Use1Q9CQ56 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Gm10605-202ENSMUST00000183019 3198 ntBASIC14.16□□□□□ -0.14
Use1Q9CQ56 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Use1Q9CQ56 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Use1Q9CQ56 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Use1Q9CQ56 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Use1Q9CQ56 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Use1Q9CQ56 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC14.15□□□□□ -0.14
Use1Q9CQ56 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Use1Q9CQ56 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms