Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm5184-201ENSMUST00000220417 1702 ntBASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ushbp1Q8R370 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Gm14780-201ENSMUST00000118387 2737 ntBASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Gm9768-201ENSMUST00000206007 2861 ntBASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Gm27300-201ENSMUST00000184085 97 ntBASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Gm27335-201ENSMUST00000184758 97 ntBASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Efs-202ENSMUST00000227037 2540 ntBASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Ushbp1Q8R370 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Ushbp1Q8R370 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ushbp1Q8R370 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ushbp1Q8R370 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ushbp1Q8R370 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ushbp1Q8R370 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ushbp1Q8R370 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ushbp1Q8R370 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ushbp1Q8R370 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
Ushbp1Q8R370 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ushbp1Q8R370 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ushbp1Q8R370 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC16.77■□□□□ 0.28
Ushbp1Q8R370 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Ushbp1Q8R370 Gm11025-201ENSMUST00000140773 466 ntBASIC16.77■□□□□ 0.28
Ushbp1Q8R370 AC147366.1-201ENSMUST00000227671 852 ntBASIC16.77■□□□□ 0.28
Ushbp1Q8R370 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ushbp1Q8R370 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ushbp1Q8R370 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Ushbp1Q8R370 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ushbp1Q8R370 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Ushbp1Q8R370 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC16.77■□□□□ 0.27
Ushbp1Q8R370 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ushbp1Q8R370 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ushbp1Q8R370 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ushbp1Q8R370 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ushbp1Q8R370 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC16.76■□□□□ 0.27
Ushbp1Q8R370 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ushbp1Q8R370 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC16.76■□□□□ 0.27
Ushbp1Q8R370 Gm4899-201ENSMUST00000178708 719 ntBASIC16.76■□□□□ 0.27
Ushbp1Q8R370 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ushbp1Q8R370 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC16.76■□□□□ 0.27
Ushbp1Q8R370 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ushbp1Q8R370 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
Ushbp1Q8R370 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ushbp1Q8R370 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC16.76■□□□□ 0.27
Ushbp1Q8R370 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Ushbp1Q8R370 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ushbp1Q8R370 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Ushbp1Q8R370 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ushbp1Q8R370 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ushbp1Q8R370 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ushbp1Q8R370 Gm37728-201ENSMUST00000195025 2292 ntBASIC16.75■□□□□ 0.27
Ushbp1Q8R370 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ushbp1Q8R370 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ushbp1Q8R370 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
Ushbp1Q8R370 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC16.75■□□□□ 0.27
Ushbp1Q8R370 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC16.75■□□□□ 0.27
Ushbp1Q8R370 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ushbp1Q8R370 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ushbp1Q8R370 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Ushbp1Q8R370 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Ushbp1Q8R370 Gm38318-201ENSMUST00000195769 1706 ntBASIC16.75■□□□□ 0.27
Ushbp1Q8R370 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Ushbp1Q8R370 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ushbp1Q8R370 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Ushbp1Q8R370 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ushbp1Q8R370 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ushbp1Q8R370 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC16.75■□□□□ 0.27
Ushbp1Q8R370 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Ushbp1Q8R370 Gm11960-202ENSMUST00000181063 2858 ntBASIC16.75■□□□□ 0.27
Ushbp1Q8R370 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 42 ms