Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
Trim56Q80VI1 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim56Q80VI1 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC17.66■□□□□ 0.42
Trim56Q80VI1 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC17.66■□□□□ 0.42
Trim56Q80VI1 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim56Q80VI1 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim56Q80VI1 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim56Q80VI1 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Trim56Q80VI1 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim56Q80VI1 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim56Q80VI1 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim56Q80VI1 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC17.65■□□□□ 0.42
Trim56Q80VI1 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trim56Q80VI1 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim56Q80VI1 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC17.65■□□□□ 0.42
Trim56Q80VI1 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
Trim56Q80VI1 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trim56Q80VI1 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim56Q80VI1 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim56Q80VI1 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC17.65■□□□□ 0.42
Trim56Q80VI1 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Trim56Q80VI1 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim56Q80VI1 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim56Q80VI1 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim56Q80VI1 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Trim56Q80VI1 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim56Q80VI1 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim56Q80VI1 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim56Q80VI1 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC17.65■□□□□ 0.42
Trim56Q80VI1 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC17.64■□□□□ 0.42
Trim56Q80VI1 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Trim56Q80VI1 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim56Q80VI1 AC126250.1-201ENSMUST00000228343 1768 ntBASIC17.64■□□□□ 0.41
Trim56Q80VI1 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim56Q80VI1 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Trim56Q80VI1 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Gm6973-201ENSMUST00000117080 721 ntBASIC17.63■□□□□ 0.41
Trim56Q80VI1 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Mir1895-201ENSMUST00000122615 79 ntBASIC17.63■□□□□ 0.41
Trim56Q80VI1 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim56Q80VI1 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC17.62■□□□□ 0.41
Trim56Q80VI1 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim56Q80VI1 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms