Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC18.37■□□□□ 0.53
Trim27Q62158 Gm2272-201ENSMUST00000194903 582 ntBASIC18.37■□□□□ 0.53
Trim27Q62158 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC18.37■□□□□ 0.53
Trim27Q62158 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trim27Q62158 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC18.37■□□□□ 0.53
Trim27Q62158 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC18.37■□□□□ 0.53
Trim27Q62158 Thap2-203ENSMUST00000218989 527 ntBASIC18.37■□□□□ 0.53
Trim27Q62158 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Trim27Q62158 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC18.37■□□□□ 0.53
Trim27Q62158 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Trim27Q62158 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim27Q62158 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim27Q62158 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim27Q62158 Fbxl12-205ENSMUST00000140702 1555 ntBASIC18.37■□□□□ 0.53
Trim27Q62158 AC131743.5-201ENSMUST00000220775 1618 ntBASIC18.37■□□□□ 0.53
Trim27Q62158 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim27Q62158 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim27Q62158 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim27Q62158 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim27Q62158 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim27Q62158 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC18.37■□□□□ 0.53
Trim27Q62158 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Trim27Q62158 Gm37305-201ENSMUST00000195714 4279 ntBASIC18.37■□□□□ 0.53
Trim27Q62158 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim27Q62158 Gm5421-201ENSMUST00000181698 2354 ntBASIC18.37■□□□□ 0.53
Trim27Q62158 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC18.37■□□□□ 0.53
Trim27Q62158 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
Trim27Q62158 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim27Q62158 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim27Q62158 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Trim27Q62158 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim27Q62158 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC18.36■□□□□ 0.53
Trim27Q62158 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trim27Q62158 Gm9727-201ENSMUST00000161387 555 ntBASIC18.36■□□□□ 0.53
Trim27Q62158 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Trim27Q62158 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trim27Q62158 Gm45504-201ENSMUST00000211407 2107 ntBASIC18.36■□□□□ 0.53
Trim27Q62158 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC18.36■□□□□ 0.53
Trim27Q62158 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim27Q62158 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim27Q62158 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trim27Q62158 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim27Q62158 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim27Q62158 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Trim27Q62158 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Trim27Q62158 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC18.36■□□□□ 0.53
Trim27Q62158 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim27Q62158 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim27Q62158 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Trim27Q62158 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim27Q62158 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Trim27Q62158 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim27Q62158 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim27Q62158 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim27Q62158 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Trim27Q62158 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim27Q62158 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trim27Q62158 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC18.35■□□□□ 0.53
Trim27Q62158 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trim27Q62158 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Trim27Q62158 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim27Q62158 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim27Q62158 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim27Q62158 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim27Q62158 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim27Q62158 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trim27Q62158 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim27Q62158 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC18.35■□□□□ 0.53
Trim27Q62158 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim27Q62158 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim27Q62158 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Trim27Q62158 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Trim27Q62158 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim27Q62158 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
Trim27Q62158 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim27Q62158 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Trim27Q62158 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Trim27Q62158 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim27Q62158 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim27Q62158 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim27Q62158 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Trim27Q62158 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Trim27Q62158 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim27Q62158 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Trim27Q62158 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim27Q62158 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim27Q62158 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trim27Q62158 Trav13-3-201ENSMUST00000117226 336 ntBASIC18.34■□□□□ 0.53
Trim27Q62158 Gm9385-201ENSMUST00000117563 472 ntBASIC18.34■□□□□ 0.53
Trim27Q62158 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Trim27Q62158 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Trim27Q62158 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim27Q62158 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim27Q62158 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim27Q62158 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim27Q62158 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC18.34■□□□□ 0.53
Trim27Q62158 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim27Q62158 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim27Q62158 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim27Q62158 Tcf21-202ENSMUST00000218002 1788 ntBASIC18.33■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms