Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Vps54Q5SPW0 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Vps54Q5SPW0 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Vps54Q5SPW0 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Vps54Q5SPW0 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Vps54Q5SPW0 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Vps54Q5SPW0 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Gm15483-201ENSMUST00000120338 456 ntBASIC17.96■□□□□ 0.47
Vps54Q5SPW0 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Gm5628-201ENSMUST00000222318 1049 ntBASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Vps54Q5SPW0 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.46
Vps54Q5SPW0 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Vps54Q5SPW0 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Vps54Q5SPW0 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Vps54Q5SPW0 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Vps54Q5SPW0 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Vps54Q5SPW0 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Vps54Q5SPW0 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Vps54Q5SPW0 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Vps54Q5SPW0 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Vps54Q5SPW0 AC126250.1-201ENSMUST00000228343 1768 ntBASIC17.95■□□□□ 0.46
Vps54Q5SPW0 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC17.95■□□□□ 0.46
Vps54Q5SPW0 Mir1895-201ENSMUST00000122615 79 ntBASIC17.95■□□□□ 0.46
Vps54Q5SPW0 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC17.95■□□□□ 0.46
Vps54Q5SPW0 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
Vps54Q5SPW0 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Vps54Q5SPW0 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Vps54Q5SPW0 Gm8096-201ENSMUST00000209921 1591 ntBASIC17.95■□□□□ 0.46
Vps54Q5SPW0 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Vps54Q5SPW0 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC17.95■□□□□ 0.46
Vps54Q5SPW0 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Vps54Q5SPW0 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Vps54Q5SPW0 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Vps54Q5SPW0 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Vps54Q5SPW0 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Vps54Q5SPW0 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Efs-202ENSMUST00000227037 2540 ntBASIC17.94■□□□□ 0.46
Vps54Q5SPW0 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Vps54Q5SPW0 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC17.93■□□□□ 0.46
Vps54Q5SPW0 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Vps54Q5SPW0 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Vps54Q5SPW0 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Vps54Q5SPW0 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Vps54Q5SPW0 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Vps54Q5SPW0 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Vps54Q5SPW0 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Vps54Q5SPW0 Gm6973-201ENSMUST00000117080 721 ntBASIC17.93■□□□□ 0.46
Vps54Q5SPW0 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms