Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Ercc3P49135 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ercc3P49135 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Ercc3P49135 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ercc3P49135 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC17.79■□□□□ 0.44
Ercc3P49135 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Ercc3P49135 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Ercc3P49135 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
Ercc3P49135 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ercc3P49135 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC17.78■□□□□ 0.44
Ercc3P49135 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Ercc3P49135 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ercc3P49135 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Ercc3P49135 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC17.78■□□□□ 0.44
Ercc3P49135 Gm16198-201ENSMUST00000118766 670 ntBASIC17.78■□□□□ 0.44
Ercc3P49135 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC17.78■□□□□ 0.44
Ercc3P49135 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC17.78■□□□□ 0.44
Ercc3P49135 Mir7036b-201ENSMUST00000184791 63 ntBASIC17.78■□□□□ 0.44
Ercc3P49135 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC17.78■□□□□ 0.44
Ercc3P49135 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ercc3P49135 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Ercc3P49135 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Ercc3P49135 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Ercc3P49135 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ercc3P49135 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ercc3P49135 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Ercc3P49135 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Ercc3P49135 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ercc3P49135 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ercc3P49135 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Ercc3P49135 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ercc3P49135 Efs-202ENSMUST00000227037 2540 ntBASIC17.77■□□□□ 0.44
Ercc3P49135 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ercc3P49135 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Ercc3P49135 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ercc3P49135 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ercc3P49135 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Ercc3P49135 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ercc3P49135 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ercc3P49135 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ercc3P49135 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC17.77■□□□□ 0.44
Ercc3P49135 Gm12008-201ENSMUST00000117791 755 ntBASIC17.77■□□□□ 0.44
Ercc3P49135 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC17.77■□□□□ 0.44
Ercc3P49135 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC17.77■□□□□ 0.44
Ercc3P49135 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC17.77■□□□□ 0.44
Ercc3P49135 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC17.77■□□□□ 0.44
Ercc3P49135 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ercc3P49135 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ercc3P49135 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Ercc3P49135 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ercc3P49135 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Ercc3P49135 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC17.77■□□□□ 0.43
Ercc3P49135 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC17.77■□□□□ 0.43
Ercc3P49135 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ercc3P49135 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ercc3P49135 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ercc3P49135 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ercc3P49135 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ercc3P49135 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC17.76■□□□□ 0.43
Ercc3P49135 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC17.76■□□□□ 0.43
Ercc3P49135 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ercc3P49135 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC17.76■□□□□ 0.43
Ercc3P49135 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ercc3P49135 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ercc3P49135 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC17.76■□□□□ 0.43
Ercc3P49135 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC17.76■□□□□ 0.43
Ercc3P49135 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
Ercc3P49135 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ercc3P49135 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ercc3P49135 Gm43195-201ENSMUST00000200614 2332 ntBASIC17.76■□□□□ 0.43
Ercc3P49135 Gm14780-201ENSMUST00000118387 2737 ntBASIC17.76■□□□□ 0.43
Ercc3P49135 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ercc3P49135 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ercc3P49135 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ercc3P49135 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ercc3P49135 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Ercc3P49135 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ercc3P49135 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ercc3P49135 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ercc3P49135 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Ercc3P49135 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC17.75■□□□□ 0.43
Ercc3P49135 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ercc3P49135 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ercc3P49135 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Ercc3P49135 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Ercc3P49135 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Ercc3P49135 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Ercc3P49135 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ercc3P49135 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ercc3P49135 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ercc3P49135 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ercc3P49135 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ercc3P49135 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ercc3P49135 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC17.75■□□□□ 0.43
Ercc3P49135 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ercc3P49135 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Ercc3P49135 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ercc3P49135 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Ercc3P49135 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
Ercc3P49135 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms