Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sdc1P18828 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sdc1P18828 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sdc1P18828 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sdc1P18828 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC12.31□□□□□ -0.44
Sdc1P18828 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Sdc1P18828 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sdc1P18828 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
Sdc1P18828 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC12.31□□□□□ -0.44
Sdc1P18828 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sdc1P18828 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sdc1P18828 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Sdc1P18828 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sdc1P18828 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC12.31□□□□□ -0.44
Sdc1P18828 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC12.31□□□□□ -0.44
Sdc1P18828 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Sdc1P18828 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Sdc1P18828 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sdc1P18828 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sdc1P18828 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sdc1P18828 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sdc1P18828 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Sdc1P18828 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sdc1P18828 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Sdc1P18828 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Sdc1P18828 Gm43364-201ENSMUST00000196046 3274 ntBASIC12.31□□□□□ -0.44
Sdc1P18828 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC12.31□□□□□ -0.44
Sdc1P18828 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC12.3□□□□□ -0.44
Sdc1P18828 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Acot6-202ENSMUST00000222921 3622 ntBASIC12.3□□□□□ -0.44
Sdc1P18828 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC12.3□□□□□ -0.44
Sdc1P18828 Gm8242-201ENSMUST00000193029 1420 ntBASIC12.3□□□□□ -0.44
Sdc1P18828 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Sdc1P18828 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Sdc1P18828 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Sdc1P18828 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Sdc1P18828 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC12.3□□□□□ -0.44
Sdc1P18828 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC12.3□□□□□ -0.44
Sdc1P18828 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC12.3□□□□□ -0.44
Sdc1P18828 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC12.3□□□□□ -0.44
Sdc1P18828 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Gm30238-201ENSMUST00000195528 2603 ntBASIC12.3□□□□□ -0.44
Sdc1P18828 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC12.3□□□□□ -0.44
Sdc1P18828 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC12.3□□□□□ -0.44
Sdc1P18828 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Sdc1P18828 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Sdc1P18828 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sdc1P18828 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sdc1P18828 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sdc1P18828 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sdc1P18828 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sdc1P18828 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC12.29□□□□□ -0.44
Sdc1P18828 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sdc1P18828 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC12.29□□□□□ -0.44
Sdc1P18828 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC12.29□□□□□ -0.44
Sdc1P18828 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC12.29□□□□□ -0.44
Sdc1P18828 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
Sdc1P18828 Gm15378-201ENSMUST00000121894 207 ntBASIC12.29□□□□□ -0.44
Sdc1P18828 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sdc1P18828 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sdc1P18828 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC12.29□□□□□ -0.44
Sdc1P18828 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Sdc1P18828 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sdc1P18828 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Sdc1P18828 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sdc1P18828 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Sdc1P18828 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Sdc1P18828 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC12.29□□□□□ -0.44
Sdc1P18828 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Sdc1P18828 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Ankra2-208ENSMUST00000226100 1476 ntBASIC12.28□□□□□ -0.44
Sdc1P18828 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sdc1P18828 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms