Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msx1P13297 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msx1P13297 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msx1P13297 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msx1P13297 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msx1P13297 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msx1P13297 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
Msx1P13297 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Msx1P13297 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msx1P13297 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC14.21□□□□□ -0.13
Msx1P13297 AC122024.2-201ENSMUST00000220086 871 ntBASIC14.21□□□□□ -0.13
Msx1P13297 AC154634.3-201ENSMUST00000224589 736 ntBASIC14.21□□□□□ -0.13
Msx1P13297 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Msx1P13297 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msx1P13297 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Msx1P13297 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msx1P13297 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msx1P13297 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Msx1P13297 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msx1P13297 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msx1P13297 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msx1P13297 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Msx1P13297 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msx1P13297 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msx1P13297 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Msx1P13297 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
Msx1P13297 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msx1P13297 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msx1P13297 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Msx1P13297 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC14.21□□□□□ -0.14
Msx1P13297 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Msx1P13297 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Msx1P13297 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Msx1P13297 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC14.2□□□□□ -0.14
Msx1P13297 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Msx1P13297 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Msx1P13297 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC14.2□□□□□ -0.14
Msx1P13297 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC14.2□□□□□ -0.14
Msx1P13297 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC14.2□□□□□ -0.14
Msx1P13297 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Gm5177-201ENSMUST00000183092 997 ntBASIC14.2□□□□□ -0.14
Msx1P13297 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC14.2□□□□□ -0.14
Msx1P13297 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC14.2□□□□□ -0.14
Msx1P13297 Gm45747-201ENSMUST00000212203 999 ntBASIC14.2□□□□□ -0.14
Msx1P13297 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Msx1P13297 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Msx1P13297 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC14.2□□□□□ -0.14
Msx1P13297 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Msx1P13297 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msx1P13297 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC14.2□□□□□ -0.14
Msx1P13297 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Msx1P13297 BC037039-201ENSMUST00000192003 2205 ntBASIC14.19□□□□□ -0.14
Msx1P13297 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Msx1P13297 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Msx1P13297 Gm29590-201ENSMUST00000190396 1304 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Msx1P13297 Fgf17-202ENSMUST00000227123 1336 ntBASIC14.19□□□□□ -0.14
Msx1P13297 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Msx1P13297 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Msx1P13297 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
Msx1P13297 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Msx1P13297 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Msx1P13297 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Msx1P13297 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
Msx1P13297 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
Msx1P13297 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Msx1P13297 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Msx1P13297 Gm12892-201ENSMUST00000117367 1146 ntBASIC14.19□□□□□ -0.14
Msx1P13297 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC14.19□□□□□ -0.14
Msx1P13297 Gm5745-201ENSMUST00000183748 313 ntBASIC14.19□□□□□ -0.14
Msx1P13297 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC14.19□□□□□ -0.14
Msx1P13297 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC14.19□□□□□ -0.14
Msx1P13297 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC14.19□□□□□ -0.14
Msx1P13297 4921527H02Rik-201ENSMUST00000196028 246 ntBASIC14.19□□□□□ -0.14
Msx1P13297 Gm43438-201ENSMUST00000198133 379 ntBASIC14.19□□□□□ -0.14
Msx1P13297 Gm7556-201ENSMUST00000201178 1084 ntBASIC14.19□□□□□ -0.14
Msx1P13297 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
Msx1P13297 Gm17872-201ENSMUST00000222550 532 ntBASIC14.19□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms