Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
RaraP11416 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RaraP11416 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RaraP11416 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC16.21■□□□□ 0.19
RaraP11416 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RaraP11416 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RaraP11416 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RaraP11416 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RaraP11416 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
RaraP11416 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RaraP11416 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
RaraP11416 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RaraP11416 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RaraP11416 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC16.21■□□□□ 0.19
RaraP11416 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC16.21■□□□□ 0.19
RaraP11416 Gm5253-201ENSMUST00000187104 1025 ntBASIC16.21■□□□□ 0.19
RaraP11416 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC16.21■□□□□ 0.19
RaraP11416 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RaraP11416 AC164567.1-201ENSMUST00000219185 960 ntBASIC16.21■□□□□ 0.19
RaraP11416 AC147366.1-201ENSMUST00000227671 852 ntBASIC16.21■□□□□ 0.19
RaraP11416 AC154757.1-201ENSMUST00000228289 336 ntBASIC16.21■□□□□ 0.19
RaraP11416 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RaraP11416 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RaraP11416 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
RaraP11416 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RaraP11416 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
RaraP11416 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RaraP11416 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
RaraP11416 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.18
RaraP11416 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
RaraP11416 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
RaraP11416 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC16.2■□□□□ 0.18
RaraP11416 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
RaraP11416 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Gm25990-201ENSMUST00000102440 86 ntBASIC16.2■□□□□ 0.18
RaraP11416 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
RaraP11416 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC16.2■□□□□ 0.18
RaraP11416 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC16.2■□□□□ 0.18
RaraP11416 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC16.2■□□□□ 0.18
RaraP11416 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC16.2■□□□□ 0.18
RaraP11416 Gm21362-201ENSMUST00000194272 928 ntBASIC16.2■□□□□ 0.18
RaraP11416 Gm9682-201ENSMUST00000197505 556 ntBASIC16.2■□□□□ 0.18
RaraP11416 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 AC151836.1-202ENSMUST00000226259 753 ntBASIC16.2■□□□□ 0.18
RaraP11416 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Birc2-201ENSMUST00000054878 378 ntBASIC16.2■□□□□ 0.18
RaraP11416 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
RaraP11416 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
RaraP11416 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
RaraP11416 Sorbs3-204ENSMUST00000227929 2460 ntBASIC16.2■□□□□ 0.18
RaraP11416 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
RaraP11416 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RaraP11416 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC16.19■□□□□ 0.18
RaraP11416 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC16.19■□□□□ 0.18
RaraP11416 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RaraP11416 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC16.19■□□□□ 0.18
RaraP11416 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RaraP11416 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RaraP11416 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RaraP11416 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RaraP11416 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RaraP11416 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC16.19■□□□□ 0.18
RaraP11416 Gm23547-201ENSMUST00000158210 271 ntBASIC16.19■□□□□ 0.18
RaraP11416 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RaraP11416 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC16.19■□□□□ 0.18
RaraP11416 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RaraP11416 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC16.19■□□□□ 0.18
RaraP11416 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RaraP11416 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RaraP11416 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms