Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col1a1P11087 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col1a1P11087 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col1a1P11087 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col1a1P11087 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col1a1P11087 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC17.36■□□□□ 0.37
Col1a1P11087 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col1a1P11087 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Col1a1P11087 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col1a1P11087 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Col1a1P11087 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Col1a1P11087 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Col1a1P11087 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Col1a1P11087 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC17.36■□□□□ 0.37
Col1a1P11087 AA619741-201ENSMUST00000195095 646 ntBASIC17.36■□□□□ 0.37
Col1a1P11087 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col1a1P11087 AC154687.2-201ENSMUST00000223853 640 ntBASIC17.36■□□□□ 0.37
Col1a1P11087 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col1a1P11087 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Col1a1P11087 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col1a1P11087 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col1a1P11087 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Col1a1P11087 Gm8131-201ENSMUST00000213783 1570 ntBASIC17.35■□□□□ 0.37
Col1a1P11087 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col1a1P11087 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Col1a1P11087 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col1a1P11087 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col1a1P11087 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Col1a1P11087 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col1a1P11087 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col1a1P11087 Gm37230-201ENSMUST00000194491 818 ntBASIC17.35■□□□□ 0.37
Col1a1P11087 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Col1a1P11087 Gm9182-201ENSMUST00000217829 639 ntBASIC17.35■□□□□ 0.37
Col1a1P11087 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col1a1P11087 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col1a1P11087 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col1a1P11087 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col1a1P11087 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col1a1P11087 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col1a1P11087 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col1a1P11087 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC17.34■□□□□ 0.37
Col1a1P11087 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col1a1P11087 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC17.34■□□□□ 0.37
Col1a1P11087 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Col1a1P11087 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Col1a1P11087 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Col1a1P11087 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col1a1P11087 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Col1a1P11087 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Col1a1P11087 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC17.34■□□□□ 0.37
Col1a1P11087 Gm9002-201ENSMUST00000178437 499 ntBASIC17.34■□□□□ 0.37
Col1a1P11087 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Col1a1P11087 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col1a1P11087 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col1a1P11087 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC17.34■□□□□ 0.37
Col1a1P11087 AC165157.4-201ENSMUST00000220587 139 ntBASIC17.34■□□□□ 0.37
Col1a1P11087 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col1a1P11087 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col1a1P11087 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col1a1P11087 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col1a1P11087 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col1a1P11087 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Col1a1P11087 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col1a1P11087 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col1a1P11087 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col1a1P11087 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col1a1P11087 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col1a1P11087 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col1a1P11087 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC17.34■□□□□ 0.37
Col1a1P11087 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Col1a1P11087 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Col1a1P11087 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
Col1a1P11087 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Col1a1P11087 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC17.33■□□□□ 0.37
Col1a1P11087 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Col1a1P11087 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Col1a1P11087 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
Col1a1P11087 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC17.33■□□□□ 0.37
Col1a1P11087 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Col1a1P11087 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Col1a1P11087 CT030657.3-201ENSMUST00000222707 1200 ntBASIC17.33■□□□□ 0.37
Col1a1P11087 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Col1a1P11087 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC17.33■□□□□ 0.37
Col1a1P11087 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col1a1P11087 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col1a1P11087 AC163637.1-201ENSMUST00000215491 1894 ntBASIC17.33■□□□□ 0.36
Col1a1P11087 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col1a1P11087 Gm45751-201ENSMUST00000210185 1573 ntBASIC17.33■□□□□ 0.36
Col1a1P11087 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col1a1P11087 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col1a1P11087 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col1a1P11087 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col1a1P11087 AC093043.3-201ENSMUST00000226531 2273 ntBASIC17.32■□□□□ 0.36
Col1a1P11087 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC17.32■□□□□ 0.36
Col1a1P11087 Gm8749-201ENSMUST00000117737 331 ntBASIC17.32■□□□□ 0.36
Col1a1P11087 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col1a1P11087 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Col1a1P11087 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Col1a1P11087 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col1a1P11087 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC17.32■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms