Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ccdc88aQ5SNZ0 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ccdc88aQ5SNZ0 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Ccdc88aQ5SNZ0 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ccdc88aQ5SNZ0 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ccdc88aQ5SNZ0 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ccdc88aQ5SNZ0 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Ccdc88aQ5SNZ0 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc88aQ5SNZ0 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc88aQ5SNZ0 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc88aQ5SNZ0 Gm3365-201ENSMUST00000216296 1480 ntBASIC17.12■□□□□ 0.33
Ccdc88aQ5SNZ0 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc88aQ5SNZ0 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc88aQ5SNZ0 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC17.12■□□□□ 0.33
Ccdc88aQ5SNZ0 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC17.12■□□□□ 0.33
Ccdc88aQ5SNZ0 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc88aQ5SNZ0 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc88aQ5SNZ0 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc88aQ5SNZ0 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Ccdc88aQ5SNZ0 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Ccdc88aQ5SNZ0 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc88aQ5SNZ0 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc88aQ5SNZ0 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc88aQ5SNZ0 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC17.12■□□□□ 0.33
Ccdc88aQ5SNZ0 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc88aQ5SNZ0 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc88aQ5SNZ0 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc88aQ5SNZ0 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc88aQ5SNZ0 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc88aQ5SNZ0 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Ccdc88aQ5SNZ0 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc88aQ5SNZ0 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc88aQ5SNZ0 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc88aQ5SNZ0 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc88aQ5SNZ0 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc88aQ5SNZ0 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc88aQ5SNZ0 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC17.11■□□□□ 0.33
Ccdc88aQ5SNZ0 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc88aQ5SNZ0 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc88aQ5SNZ0 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc88aQ5SNZ0 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc88aQ5SNZ0 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc88aQ5SNZ0 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 Gm12138-201ENSMUST00000122180 951 ntBASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 Gm27989-201ENSMUST00000184721 107 ntBASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 Gm7775-201ENSMUST00000218871 853 ntBASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 Gm6888-201ENSMUST00000221983 706 ntBASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 Gm13034-201ENSMUST00000121342 3177 ntBASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc88aQ5SNZ0 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 AC164565.1-201ENSMUST00000217520 1484 ntBASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Syt7-205ENSMUST00000224135 1557 ntBASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Gm25144-201ENSMUST00000179561 110 ntBASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Gm25352-201ENSMUST00000179815 110 ntBASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Klk2-ps-201ENSMUST00000205342 571 ntBASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Gm45384-201ENSMUST00000210451 277 ntBASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Gm5357-201ENSMUST00000212720 1924 ntBASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc88aQ5SNZ0 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Ccdc88aQ5SNZ0 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Ccdc88aQ5SNZ0 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc88aQ5SNZ0 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc88aQ5SNZ0 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Ccdc88aQ5SNZ0 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc88aQ5SNZ0 Gm15487-201ENSMUST00000122373 465 ntBASIC17.08■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 58.1 ms