Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Col28a1Q2UY11 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.07
Col28a1Q2UY11 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Col28a1Q2UY11 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col28a1Q2UY11 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC14.58□□□□□ -0.08
Col28a1Q2UY11 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC14.58□□□□□ -0.08
Col28a1Q2UY11 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col28a1Q2UY11 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col28a1Q2UY11 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col28a1Q2UY11 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Col28a1Q2UY11 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC14.58□□□□□ -0.08
Col28a1Q2UY11 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col28a1Q2UY11 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col28a1Q2UY11 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col28a1Q2UY11 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col28a1Q2UY11 Gm25406-201ENSMUST00000157599 105 ntBASIC14.58□□□□□ -0.08
Col28a1Q2UY11 Gm27525-201ENSMUST00000184465 107 ntBASIC14.58□□□□□ -0.08
Col28a1Q2UY11 Gm18206-201ENSMUST00000207027 926 ntBASIC14.58□□□□□ -0.08
Col28a1Q2UY11 AC160980.1-201ENSMUST00000224136 970 ntBASIC14.58□□□□□ -0.08
Col28a1Q2UY11 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col28a1Q2UY11 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Col28a1Q2UY11 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col28a1Q2UY11 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC14.58□□□□□ -0.08
Col28a1Q2UY11 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col28a1Q2UY11 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC14.58□□□□□ -0.08
Col28a1Q2UY11 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
Col28a1Q2UY11 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col28a1Q2UY11 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Col28a1Q2UY11 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Gm15372-201ENSMUST00000120729 834 ntBASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC14.57□□□□□ -0.08
Col28a1Q2UY11 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Gm7556-201ENSMUST00000201178 1084 ntBASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Gm38042-201ENSMUST00000191614 5208 ntBASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col28a1Q2UY11 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Gm12644-201ENSMUST00000119935 606 ntBASIC14.56□□□□□ -0.08
Col28a1Q2UY11 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC14.56□□□□□ -0.08
Col28a1Q2UY11 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms