Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Gm27357-201ENSMUST00000183754 135 ntBASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Gm21362-201ENSMUST00000194272 928 ntBASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 AC127302.2-201ENSMUST00000215212 268 ntBASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Ptchd3Q0EEE2 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ptchd3Q0EEE2 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ptchd3Q0EEE2 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ptchd3Q0EEE2 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Ptchd3Q0EEE2 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ptchd3Q0EEE2 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Gm27867-201ENSMUST00000184778 125 ntBASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 AC127349.1-201ENSMUST00000224590 266 ntBASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Ptchd3Q0EEE2 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Gm15165-201ENSMUST00000118140 502 ntBASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Gm25406-201ENSMUST00000157599 105 ntBASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Gm8349-201ENSMUST00000182720 1003 ntBASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 AC130671.1-201ENSMUST00000227384 1237 ntBASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
Ptchd3Q0EEE2 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ptchd3Q0EEE2 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ptchd3Q0EEE2 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Ptchd3Q0EEE2 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ptchd3Q0EEE2 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ptchd3Q0EEE2 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ptchd3Q0EEE2 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ptchd3Q0EEE2 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms