Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Nkx3-1P97436 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Nkx3-1P97436 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Nkx3-1P97436 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Nkx3-1P97436 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Nkx3-1P97436 Gm18737-201ENSMUST00000173594 937 ntBASIC12.96□□□□□ -0.33
Nkx3-1P97436 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Nkx3-1P97436 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Nkx3-1P97436 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Nkx3-1P97436 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Nkx3-1P97436 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Nkx3-1P97436 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Nkx3-1P97436 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
Nkx3-1P97436 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
Nkx3-1P97436 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Nkx3-1P97436 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Nkx3-1P97436 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Nkx3-1P97436 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Nkx3-1P97436 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC12.96□□□□□ -0.34
Nkx3-1P97436 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Nkx3-1P97436 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Nkx3-1P97436 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
Nkx3-1P97436 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Nkx3-1P97436 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
Nkx3-1P97436 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Nkx3-1P97436 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
Nkx3-1P97436 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
Nkx3-1P97436 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC12.95□□□□□ -0.34
Nkx3-1P97436 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Gm2810-201ENSMUST00000118681 990 ntBASIC12.95□□□□□ -0.34
Nkx3-1P97436 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC12.95□□□□□ -0.34
Nkx3-1P97436 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC12.95□□□□□ -0.34
Nkx3-1P97436 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC12.95□□□□□ -0.34
Nkx3-1P97436 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Gm44616-201ENSMUST00000206417 1732 ntBASIC12.95□□□□□ -0.34
Nkx3-1P97436 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 AC153526.5-201ENSMUST00000218661 2147 ntBASIC12.95□□□□□ -0.34
Nkx3-1P97436 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Nkx3-1P97436 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Nkx3-1P97436 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC12.94□□□□□ -0.34
Nkx3-1P97436 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Gm38225-201ENSMUST00000194001 393 ntBASIC12.94□□□□□ -0.34
Nkx3-1P97436 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Nkx3-1P97436 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC12.93□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 48.2 ms