Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vti1aO89116 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vti1aO89116 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vti1aO89116 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vti1aO89116 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC16.18■□□□□ 0.18
Vti1aO89116 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Vti1aO89116 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Vti1aO89116 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC16.17■□□□□ 0.18
Vti1aO89116 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Gm12008-201ENSMUST00000117791 755 ntBASIC16.17■□□□□ 0.18
Vti1aO89116 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC16.17■□□□□ 0.18
Vti1aO89116 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC16.17■□□□□ 0.18
Vti1aO89116 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC16.17■□□□□ 0.18
Vti1aO89116 Gpr146-202ENSMUST00000053120 1040 ntBASIC16.17■□□□□ 0.18
Vti1aO89116 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Gm13410-201ENSMUST00000117058 1415 ntBASIC16.17■□□□□ 0.18
Vti1aO89116 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Vti1aO89116 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Fgf17-202ENSMUST00000227123 1336 ntBASIC16.17■□□□□ 0.18
Vti1aO89116 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Vti1aO89116 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Vti1aO89116 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Vti1aO89116 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vti1aO89116 Tfap2a-203ENSMUST00000223869 2037 ntBASIC16.16■□□□□ 0.18
Vti1aO89116 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Vti1aO89116 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vti1aO89116 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vti1aO89116 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vti1aO89116 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC16.16■□□□□ 0.18
Vti1aO89116 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC16.16■□□□□ 0.18
Vti1aO89116 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC16.16■□□□□ 0.18
Vti1aO89116 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vti1aO89116 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vti1aO89116 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vti1aO89116 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vti1aO89116 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vti1aO89116 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vti1aO89116 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC16.16■□□□□ 0.18
Vti1aO89116 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vti1aO89116 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vti1aO89116 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vti1aO89116 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
Vti1aO89116 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vti1aO89116 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Vti1aO89116 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Vti1aO89116 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Vti1aO89116 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
Vti1aO89116 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Vti1aO89116 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC16.15■□□□□ 0.18
Vti1aO89116 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Vti1aO89116 Mir6990-201ENSMUST00000183724 91 ntBASIC16.15■□□□□ 0.18
Vti1aO89116 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Vti1aO89116 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC16.15■□□□□ 0.18
Vti1aO89116 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Vti1aO89116 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC16.15■□□□□ 0.18
Vti1aO89116 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Vti1aO89116 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Vti1aO89116 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Vti1aO89116 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Vti1aO89116 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Vti1aO89116 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Vti1aO89116 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Vti1aO89116 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Vti1aO89116 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Vti1aO89116 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Vti1aO89116 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Vti1aO89116 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Vti1aO89116 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Vti1aO89116 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Vti1aO89116 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Vti1aO89116 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Vti1aO89116 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Vti1aO89116 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Vti1aO89116 Gm13337-201ENSMUST00000119183 1594 ntBASIC16.14■□□□□ 0.17
Vti1aO89116 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Vti1aO89116 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Vti1aO89116 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Vti1aO89116 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Vti1aO89116 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
Vti1aO89116 AC126250.1-201ENSMUST00000228343 1768 ntBASIC16.14■□□□□ 0.17
Vti1aO89116 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Vti1aO89116 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms