Protein–RNA interactions for Protein: Q9JKX8

Upk3a, Uroplakin-3a, mousemouse

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upk3aQ9JKX8 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Upk3aQ9JKX8 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Upk3aQ9JKX8 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Upk3aQ9JKX8 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Upk3aQ9JKX8 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Upk3aQ9JKX8 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Upk3aQ9JKX8 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC14.46□□□□□ -0.1
Upk3aQ9JKX8 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Upk3aQ9JKX8 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Upk3aQ9JKX8 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Upk3aQ9JKX8 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Upk3aQ9JKX8 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Upk3aQ9JKX8 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 AC131743.5-201ENSMUST00000220775 1618 ntBASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Camk2g-217ENSMUST00000226630 1937 ntBASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upk3aQ9JKX8 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Gm8597-201ENSMUST00000191525 1109 ntBASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upk3aQ9JKX8 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Upk3aQ9JKX8 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Upk3aQ9JKX8 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Upk3aQ9JKX8 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Upk3aQ9JKX8 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Upk3aQ9JKX8 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Upk3aQ9JKX8 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Upk3aQ9JKX8 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Upk3aQ9JKX8 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Upk3aQ9JKX8 Gm13410-201ENSMUST00000117058 1415 ntBASIC14.43□□□□□ -0.1
Upk3aQ9JKX8 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Upk3aQ9JKX8 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Upk3aQ9JKX8 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Upk3aQ9JKX8 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Upk3aQ9JKX8 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Upk3aQ9JKX8 Gm15427-201ENSMUST00000117288 531 ntBASIC14.43□□□□□ -0.1
Upk3aQ9JKX8 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC14.43□□□□□ -0.1
Upk3aQ9JKX8 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Upk3aQ9JKX8 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms