Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Trub1Q8C0D0 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC15.52■□□□□ 0.08
Trub1Q8C0D0 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
Trub1Q8C0D0 Gm27300-201ENSMUST00000184085 97 ntBASIC15.52■□□□□ 0.08
Trub1Q8C0D0 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Trub1Q8C0D0 Gm27335-201ENSMUST00000184758 97 ntBASIC15.52■□□□□ 0.08
Trub1Q8C0D0 AC084391.1-201ENSMUST00000200651 141 ntBASIC15.52■□□□□ 0.08
Trub1Q8C0D0 Gm2651-201ENSMUST00000203560 838 ntBASIC15.52■□□□□ 0.08
Trub1Q8C0D0 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trub1Q8C0D0 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
Trub1Q8C0D0 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trub1Q8C0D0 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trub1Q8C0D0 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trub1Q8C0D0 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trub1Q8C0D0 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trub1Q8C0D0 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trub1Q8C0D0 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trub1Q8C0D0 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trub1Q8C0D0 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Trub1Q8C0D0 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trub1Q8C0D0 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trub1Q8C0D0 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Trub1Q8C0D0 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Trub1Q8C0D0 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Gm21009-201ENSMUST00000197169 1669 ntBASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Trub1Q8C0D0 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC15.51■□□□□ 0.07
Trub1Q8C0D0 AC138767.1-201ENSMUST00000222661 415 ntBASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trub1Q8C0D0 Gm11960-202ENSMUST00000181063 2858 ntBASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 CT010506.4-201ENSMUST00000225457 351 ntBASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Mzt1-203ENSMUST00000227948 952 ntBASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trub1Q8C0D0 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trub1Q8C0D0 AC025913.2-201ENSMUST00000220136 1766 ntBASIC15.49■□□□□ 0.07
Trub1Q8C0D0 Gm11873-201ENSMUST00000117877 1304 ntBASIC15.49■□□□□ 0.07
Trub1Q8C0D0 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Trub1Q8C0D0 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trub1Q8C0D0 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trub1Q8C0D0 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trub1Q8C0D0 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trub1Q8C0D0 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trub1Q8C0D0 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Trub1Q8C0D0 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC15.49■□□□□ 0.07
Trub1Q8C0D0 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trub1Q8C0D0 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trub1Q8C0D0 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
Trub1Q8C0D0 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Trub1Q8C0D0 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trub1Q8C0D0 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trub1Q8C0D0 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
Trub1Q8C0D0 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trub1Q8C0D0 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC15.48■□□□□ 0.07
Trub1Q8C0D0 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Trub1Q8C0D0 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Trub1Q8C0D0 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms