Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col28a1Q2UY11 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 AC148324.1-201ENSMUST00000219034 4240 ntBASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Ap5m1-205ENSMUST00000227431 3757 ntBASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Gm7935-201ENSMUST00000100555 1278 ntBASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Gm7507-201ENSMUST00000183053 1008 ntBASIC14.61□□□□□ -0.07
Col28a1Q2UY11 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
Col28a1Q2UY11 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Gm18195-201ENSMUST00000207604 706 ntBASIC14.6□□□□□ -0.07
Col28a1Q2UY11 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 AC125350.1-201ENSMUST00000225115 903 ntBASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col28a1Q2UY11 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col28a1Q2UY11 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms