Protein–RNA interactions for Protein: P50220

Nkx2-1, Homeobox protein Nkx-2.1, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-1P50220 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx2-1P50220 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx2-1P50220 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx2-1P50220 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx2-1P50220 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx2-1P50220 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx2-1P50220 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx2-1P50220 Gm38577-201ENSMUST00000221531 4545 ntBASIC12.5□□□□□ -0.41
Nkx2-1P50220 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC12.5□□□□□ -0.41
Nkx2-1P50220 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Nkx2-1P50220 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC12.49□□□□□ -0.41
Nkx2-1P50220 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC12.49□□□□□ -0.41
Nkx2-1P50220 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC12.49□□□□□ -0.41
Nkx2-1P50220 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx2-1P50220 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC12.49□□□□□ -0.41
Nkx2-1P50220 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Gm14722-201ENSMUST00000118943 689 ntBASIC12.48□□□□□ -0.41
Nkx2-1P50220 Gm11860-201ENSMUST00000122346 1010 ntBASIC12.48□□□□□ -0.41
Nkx2-1P50220 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx2-1P50220 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx2-1P50220 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Nkx2-1P50220 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms