Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ube4aE9Q735 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Ube4aE9Q735 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Ube4aE9Q735 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ube4aE9Q735 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Ube4aE9Q735 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ube4aE9Q735 Gm6756-201ENSMUST00000180647 1620 ntBASIC18■□□□□ 0.47
Ube4aE9Q735 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC18■□□□□ 0.47
Ube4aE9Q735 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ube4aE9Q735 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ube4aE9Q735 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ube4aE9Q735 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC17.99■□□□□ 0.47
Ube4aE9Q735 Tcf21-202ENSMUST00000218002 1788 ntBASIC17.99■□□□□ 0.47
Ube4aE9Q735 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ube4aE9Q735 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ube4aE9Q735 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ube4aE9Q735 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ube4aE9Q735 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC17.99■□□□□ 0.47
Ube4aE9Q735 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Ube4aE9Q735 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ube4aE9Q735 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ube4aE9Q735 Gm5566-201ENSMUST00000116118 459 ntBASIC17.99■□□□□ 0.47
Ube4aE9Q735 Gm14767-201ENSMUST00000121559 586 ntBASIC17.99■□□□□ 0.47
Ube4aE9Q735 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC17.99■□□□□ 0.47
Ube4aE9Q735 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC17.99■□□□□ 0.47
Ube4aE9Q735 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC17.99■□□□□ 0.47
Ube4aE9Q735 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ube4aE9Q735 Gm27680-201ENSMUST00000184192 160 ntBASIC17.99■□□□□ 0.47
Ube4aE9Q735 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC17.99■□□□□ 0.47
Ube4aE9Q735 Gm9063-201ENSMUST00000223299 582 ntBASIC17.99■□□□□ 0.47
Ube4aE9Q735 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ube4aE9Q735 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Ube4aE9Q735 AC124751.1-201ENSMUST00000222716 1408 ntBASIC17.98■□□□□ 0.47
Ube4aE9Q735 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Ube4aE9Q735 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ube4aE9Q735 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ube4aE9Q735 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ube4aE9Q735 Trav13-3-201ENSMUST00000117226 336 ntBASIC17.98■□□□□ 0.47
Ube4aE9Q735 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Ube4aE9Q735 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC17.98■□□□□ 0.47
Ube4aE9Q735 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ube4aE9Q735 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Ube4aE9Q735 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ube4aE9Q735 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ube4aE9Q735 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ube4aE9Q735 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Ube4aE9Q735 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Ube4aE9Q735 Gm44616-201ENSMUST00000206417 1732 ntBASIC17.98■□□□□ 0.47
Ube4aE9Q735 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Ube4aE9Q735 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ube4aE9Q735 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ube4aE9Q735 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 Gm11839-201ENSMUST00000120647 1953 ntBASIC17.97■□□□□ 0.47
Ube4aE9Q735 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Ube4aE9Q735 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 Gm45098-201ENSMUST00000207179 657 ntBASIC17.97■□□□□ 0.47
Ube4aE9Q735 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ube4aE9Q735 Gm43195-201ENSMUST00000200614 2332 ntBASIC17.97■□□□□ 0.47
Ube4aE9Q735 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC17.96■□□□□ 0.47
Ube4aE9Q735 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
Ube4aE9Q735 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC17.96■□□□□ 0.47
Ube4aE9Q735 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ube4aE9Q735 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC17.96■□□□□ 0.47
Ube4aE9Q735 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ube4aE9Q735 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ube4aE9Q735 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ube4aE9Q735 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC17.96■□□□□ 0.47
Ube4aE9Q735 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC17.96■□□□□ 0.47
Ube4aE9Q735 Gm8749-201ENSMUST00000117737 331 ntBASIC17.96■□□□□ 0.47
Ube4aE9Q735 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC17.96■□□□□ 0.47
Ube4aE9Q735 Gm9719-201ENSMUST00000162765 543 ntBASIC17.96■□□□□ 0.47
Ube4aE9Q735 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ube4aE9Q735 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ube4aE9Q735 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ube4aE9Q735 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ube4aE9Q735 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ube4aE9Q735 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ube4aE9Q735 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ube4aE9Q735 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ube4aE9Q735 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms