Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC16.89■□□□□ 0.3
Ushbp1Q8R370 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC16.89■□□□□ 0.3
Ushbp1Q8R370 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC16.89■□□□□ 0.3
Ushbp1Q8R370 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
Ushbp1Q8R370 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ushbp1Q8R370 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ushbp1Q8R370 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Ushbp1Q8R370 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Ushbp1Q8R370 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Ushbp1Q8R370 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC16.89■□□□□ 0.29
Ushbp1Q8R370 CT009510.1-201ENSMUST00000227972 270 ntBASIC16.89■□□□□ 0.29
Ushbp1Q8R370 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ushbp1Q8R370 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ushbp1Q8R370 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ushbp1Q8R370 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ushbp1Q8R370 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ushbp1Q8R370 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Ushbp1Q8R370 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ushbp1Q8R370 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ushbp1Q8R370 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ushbp1Q8R370 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Gm11185-201ENSMUST00000117732 1007 ntBASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Gm15500-202ENSMUST00000071641 1019 ntBASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Gm29340-201ENSMUST00000188763 3854 ntBASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ushbp1Q8R370 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ushbp1Q8R370 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ushbp1Q8R370 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Ushbp1Q8R370 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ushbp1Q8R370 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Ushbp1Q8R370 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ushbp1Q8R370 Gm15920-201ENSMUST00000118998 402 ntBASIC16.87■□□□□ 0.29
Ushbp1Q8R370 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ushbp1Q8R370 Gm5682-201ENSMUST00000173402 505 ntBASIC16.87■□□□□ 0.29
Ushbp1Q8R370 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ushbp1Q8R370 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC16.87■□□□□ 0.29
Ushbp1Q8R370 Gm7229-201ENSMUST00000214719 1007 ntBASIC16.87■□□□□ 0.29
Ushbp1Q8R370 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ushbp1Q8R370 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ushbp1Q8R370 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ushbp1Q8R370 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Ushbp1Q8R370 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
Ushbp1Q8R370 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Ushbp1Q8R370 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ushbp1Q8R370 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Gm11453-201ENSMUST00000117318 1007 ntBASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Gm14057-201ENSMUST00000120631 482 ntBASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Gm18489-201ENSMUST00000172565 551 ntBASIC16.86■□□□□ 0.29
Ushbp1Q8R370 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Celf4-206ENSMUST00000224553 1729 ntBASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Gm11873-201ENSMUST00000117877 1304 ntBASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ushbp1Q8R370 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms