Protein–RNA interactions for Protein: Q8CHD8

Rab11fip3, Rab11 family-interacting protein 3, mousemouse

Predictions only

Length 1,047 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rab11fip3Q8CHD8 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rab11fip3Q8CHD8 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rab11fip3Q8CHD8 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rab11fip3Q8CHD8 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rab11fip3Q8CHD8 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rab11fip3Q8CHD8 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rab11fip3Q8CHD8 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Rab11fip3Q8CHD8 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rab11fip3Q8CHD8 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Rab11fip3Q8CHD8 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rab11fip3Q8CHD8 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rab11fip3Q8CHD8 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rab11fip3Q8CHD8 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rab11fip3Q8CHD8 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Rab11fip3Q8CHD8 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC19.46■□□□□ 0.71
Rab11fip3Q8CHD8 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rab11fip3Q8CHD8 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rab11fip3Q8CHD8 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rab11fip3Q8CHD8 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rab11fip3Q8CHD8 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rab11fip3Q8CHD8 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Rab11fip3Q8CHD8 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC19.46■□□□□ 0.71
Rab11fip3Q8CHD8 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 Gm15483-201ENSMUST00000120338 456 ntBASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rab11fip3Q8CHD8 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC19.44■□□□□ 0.7
Rab11fip3Q8CHD8 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rab11fip3Q8CHD8 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rab11fip3Q8CHD8 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rab11fip3Q8CHD8 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Rab11fip3Q8CHD8 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rab11fip3Q8CHD8 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC19.44■□□□□ 0.7
Rab11fip3Q8CHD8 AA543401-201ENSMUST00000164248 1269 ntBASIC19.44■□□□□ 0.7
Rab11fip3Q8CHD8 Gm9824-201ENSMUST00000178707 561 ntBASIC19.44■□□□□ 0.7
Rab11fip3Q8CHD8 Gm27920-201ENSMUST00000183953 96 ntBASIC19.44■□□□□ 0.7
Rab11fip3Q8CHD8 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Rab11fip3Q8CHD8 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC19.44■□□□□ 0.7
Rab11fip3Q8CHD8 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC19.44■□□□□ 0.7
Rab11fip3Q8CHD8 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rab11fip3Q8CHD8 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rab11fip3Q8CHD8 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rab11fip3Q8CHD8 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rab11fip3Q8CHD8 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rab11fip3Q8CHD8 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rab11fip3Q8CHD8 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rab11fip3Q8CHD8 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Gm7336-201ENSMUST00000107041 1232 ntBASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Gm15693-201ENSMUST00000120470 637 ntBASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Gm22175-201ENSMUST00000175007 78 ntBASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rab11fip3Q8CHD8 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rab11fip3Q8CHD8 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rab11fip3Q8CHD8 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rab11fip3Q8CHD8 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rab11fip3Q8CHD8 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rab11fip3Q8CHD8 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rab11fip3Q8CHD8 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rab11fip3Q8CHD8 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Rab11fip3Q8CHD8 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC19.42■□□□□ 0.7
Rab11fip3Q8CHD8 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Rab11fip3Q8CHD8 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 52.3 ms