Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC16.63■□□□□ 0.25
Trim9Q8C7M3 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 AC138767.1-201ENSMUST00000222661 415 ntBASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Mzt1-203ENSMUST00000227948 952 ntBASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Gm7461-201ENSMUST00000058918 827 ntBASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 AC025913.2-201ENSMUST00000220136 1766 ntBASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim9Q8C7M3 Gm21009-201ENSMUST00000197169 1669 ntBASIC16.62■□□□□ 0.25
Trim9Q8C7M3 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim9Q8C7M3 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim9Q8C7M3 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim9Q8C7M3 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim9Q8C7M3 Gm11960-202ENSMUST00000181063 2858 ntBASIC16.62■□□□□ 0.25
Trim9Q8C7M3 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim9Q8C7M3 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim9Q8C7M3 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC16.62■□□□□ 0.25
Trim9Q8C7M3 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim9Q8C7M3 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim9Q8C7M3 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC16.62■□□□□ 0.25
Trim9Q8C7M3 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Trim9Q8C7M3 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim9Q8C7M3 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
Trim9Q8C7M3 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim9Q8C7M3 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
Trim9Q8C7M3 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim9Q8C7M3 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Trim9Q8C7M3 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim9Q8C7M3 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trim9Q8C7M3 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim9Q8C7M3 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim9Q8C7M3 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim9Q8C7M3 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC16.61■□□□□ 0.25
Trim9Q8C7M3 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Trim9Q8C7M3 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC16.61■□□□□ 0.25
Trim9Q8C7M3 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim9Q8C7M3 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim9Q8C7M3 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim9Q8C7M3 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trim9Q8C7M3 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim9Q8C7M3 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim9Q8C7M3 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim9Q8C7M3 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Trim9Q8C7M3 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim9Q8C7M3 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim9Q8C7M3 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Trim9Q8C7M3 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC16.6■□□□□ 0.25
Trim9Q8C7M3 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim9Q8C7M3 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC16.6■□□□□ 0.25
Trim9Q8C7M3 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC16.6■□□□□ 0.25
Trim9Q8C7M3 CT010506.4-201ENSMUST00000225457 351 ntBASIC16.6■□□□□ 0.25
Trim9Q8C7M3 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Trim9Q8C7M3 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trim9Q8C7M3 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trim9Q8C7M3 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trim9Q8C7M3 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Trim9Q8C7M3 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim9Q8C7M3 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim9Q8C7M3 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trim9Q8C7M3 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Trim9Q8C7M3 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim9Q8C7M3 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trim9Q8C7M3 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
Trim9Q8C7M3 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim9Q8C7M3 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim9Q8C7M3 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim9Q8C7M3 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
Trim9Q8C7M3 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
Trim9Q8C7M3 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trim9Q8C7M3 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim9Q8C7M3 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim9Q8C7M3 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim9Q8C7M3 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Trim9Q8C7M3 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim9Q8C7M3 Gm13597-201ENSMUST00000121239 375 ntBASIC16.59■□□□□ 0.25
Trim9Q8C7M3 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Trim9Q8C7M3 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms