Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Gm44945-201ENSMUST00000206764 1187 ntBASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Rtl3Q6P1Y1 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Chchd1-203ENSMUST00000224633 557 ntBASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Gm15500-202ENSMUST00000071641 1019 ntBASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Rtl3Q6P1Y1 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Tfap2a-203ENSMUST00000223869 2037 ntBASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Gm11839-201ENSMUST00000120647 1953 ntBASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Gm12008-201ENSMUST00000117791 755 ntBASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Rtl3Q6P1Y1 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Rtl3Q6P1Y1 AC025913.2-201ENSMUST00000220136 1766 ntBASIC15.54■□□□□ 0.08
Rtl3Q6P1Y1 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Rtl3Q6P1Y1 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Rtl3Q6P1Y1 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC15.54■□□□□ 0.08
Rtl3Q6P1Y1 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Rtl3Q6P1Y1 Gm8242-201ENSMUST00000193029 1420 ntBASIC15.54■□□□□ 0.08
Rtl3Q6P1Y1 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Rtl3Q6P1Y1 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Rtl3Q6P1Y1 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Rtl3Q6P1Y1 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Rtl3Q6P1Y1 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC15.54■□□□□ 0.08
Rtl3Q6P1Y1 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC15.54■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 54.3 ms