Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Gm24543-201ENSMUST00000103867 82 ntBASIC16.45■□□□□ 0.22
Cln3Q61124 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cln3Q61124 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cln3Q61124 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cln3Q61124 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cln3Q61124 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cln3Q61124 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Cln3Q61124 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cln3Q61124 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Cln3Q61124 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cln3Q61124 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Cln3Q61124 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cln3Q61124 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cln3Q61124 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC16.44■□□□□ 0.22
Cln3Q61124 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cln3Q61124 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cln3Q61124 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
Cln3Q61124 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cln3Q61124 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC16.44■□□□□ 0.22
Cln3Q61124 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cln3Q61124 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cln3Q61124 Gm27838-201ENSMUST00000184829 128 ntBASIC16.44■□□□□ 0.22
Cln3Q61124 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC16.44■□□□□ 0.22
Cln3Q61124 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cln3Q61124 AC135669.1-201ENSMUST00000213585 412 ntBASIC16.44■□□□□ 0.22
Cln3Q61124 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cln3Q61124 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cln3Q61124 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cln3Q61124 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cln3Q61124 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Cln3Q61124 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cln3Q61124 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cln3Q61124 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cln3Q61124 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cln3Q61124 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
Cln3Q61124 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Cln3Q61124 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cln3Q61124 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Cln3Q61124 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC16.43■□□□□ 0.22
Cln3Q61124 Gm15321-201ENSMUST00000121290 288 ntBASIC16.43■□□□□ 0.22
Cln3Q61124 AC090659.2-201ENSMUST00000225378 1186 ntBASIC16.43■□□□□ 0.22
Cln3Q61124 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cln3Q61124 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cln3Q61124 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cln3Q61124 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cln3Q61124 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cln3Q61124 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cln3Q61124 Gm45412-201ENSMUST00000210217 2275 ntBASIC16.43■□□□□ 0.22
Cln3Q61124 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cln3Q61124 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cln3Q61124 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC16.42■□□□□ 0.22
Cln3Q61124 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cln3Q61124 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cln3Q61124 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Cln3Q61124 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Cln3Q61124 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Cln3Q61124 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cln3Q61124 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cln3Q61124 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cln3Q61124 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cln3Q61124 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
Cln3Q61124 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Cln3Q61124 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Cln3Q61124 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cln3Q61124 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Cln3Q61124 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC16.42■□□□□ 0.22
Cln3Q61124 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cln3Q61124 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cln3Q61124 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Cln3Q61124 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cln3Q61124 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cln3Q61124 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cln3Q61124 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Cln3Q61124 AC163637.1-201ENSMUST00000215491 1894 ntBASIC16.42■□□□□ 0.22
Cln3Q61124 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cln3Q61124 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cln3Q61124 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cln3Q61124 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Cln3Q61124 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cln3Q61124 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cln3Q61124 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cln3Q61124 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Cln3Q61124 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC16.41■□□□□ 0.22
Cln3Q61124 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cln3Q61124 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC16.41■□□□□ 0.22
Cln3Q61124 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
Cln3Q61124 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cln3Q61124 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Cln3Q61124 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Cln3Q61124 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC16.41■□□□□ 0.22
Cln3Q61124 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC16.41■□□□□ 0.22
Cln3Q61124 Gm43438-201ENSMUST00000198133 379 ntBASIC16.41■□□□□ 0.22
Cln3Q61124 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC16.41■□□□□ 0.22
Cln3Q61124 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cln3Q61124 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cln3Q61124 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cln3Q61124 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Cln3Q61124 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cln3Q61124 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cln3Q61124 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms