Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Rnf180Q3U827 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Rnf180Q3U827 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf180Q3U827 AC113441.2-201ENSMUST00000221538 1468 ntBASIC17.51■□□□□ 0.39
Rnf180Q3U827 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Gm24196-201ENSMUST00000179161 110 ntBASIC17.51■□□□□ 0.39
Rnf180Q3U827 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
Rnf180Q3U827 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf180Q3U827 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC17.51■□□□□ 0.39
Rnf180Q3U827 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Gm10012-201ENSMUST00000078252 192 ntBASIC17.51■□□□□ 0.39
Rnf180Q3U827 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf180Q3U827 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Rnf180Q3U827 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Gm17795-201ENSMUST00000214505 757 ntBASIC17.5■□□□□ 0.39
Rnf180Q3U827 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf180Q3U827 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
Rnf180Q3U827 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf180Q3U827 Gm13050-201ENSMUST00000122149 1345 ntBASIC17.49■□□□□ 0.39
Rnf180Q3U827 Rbfox2-206ENSMUST00000227314 1810 ntBASIC17.49■□□□□ 0.39
Rnf180Q3U827 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf180Q3U827 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf180Q3U827 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf180Q3U827 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf180Q3U827 Gm5763-201ENSMUST00000155951 1530 ntBASIC17.49■□□□□ 0.39
Rnf180Q3U827 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Rnf180Q3U827 Gm14263-201ENSMUST00000117955 746 ntBASIC17.49■□□□□ 0.39
Rnf180Q3U827 Gm12997-201ENSMUST00000120207 640 ntBASIC17.49■□□□□ 0.39
Rnf180Q3U827 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Rnf180Q3U827 Gm24514-201ENSMUST00000174961 285 ntBASIC17.49■□□□□ 0.39
Rnf180Q3U827 Gm6944-201ENSMUST00000182449 1006 ntBASIC17.49■□□□□ 0.39
Rnf180Q3U827 Gm43118-201ENSMUST00000199149 775 ntBASIC17.49■□□□□ 0.39
Rnf180Q3U827 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC17.49■□□□□ 0.39
Rnf180Q3U827 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf180Q3U827 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf180Q3U827 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf180Q3U827 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf180Q3U827 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf180Q3U827 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf180Q3U827 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC17.49■□□□□ 0.39
Rnf180Q3U827 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf180Q3U827 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.48■□□□□ 0.39
Rnf180Q3U827 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf180Q3U827 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf180Q3U827 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf180Q3U827 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf180Q3U827 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf180Q3U827 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf180Q3U827 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC17.48■□□□□ 0.39
Rnf180Q3U827 Gm42627-201ENSMUST00000197347 224 ntBASIC17.48■□□□□ 0.39
Rnf180Q3U827 Rps4l-202ENSMUST00000204242 789 ntBASIC17.48■□□□□ 0.39
Rnf180Q3U827 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf180Q3U827 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf180Q3U827 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf180Q3U827 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf180Q3U827 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf180Q3U827 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rnf180Q3U827 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC17.48■□□□□ 0.39
Rnf180Q3U827 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms