Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC12.41□□□□□ -0.42
Sdc1P18828 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC12.4□□□□□ -0.42
Sdc1P18828 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc1P18828 Ntrk2-208ENSMUST00000225583 2719 ntBASIC12.4□□□□□ -0.42
Sdc1P18828 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc1P18828 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC12.4□□□□□ -0.42
Sdc1P18828 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc1P18828 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc1P18828 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC12.4□□□□□ -0.42
Sdc1P18828 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc1P18828 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC12.4□□□□□ -0.42
Sdc1P18828 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc1P18828 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc1P18828 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc1P18828 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC12.4□□□□□ -0.42
Sdc1P18828 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc1P18828 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc1P18828 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc1P18828 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC12.4□□□□□ -0.42
Sdc1P18828 Gm42632-201ENSMUST00000201707 2411 ntBASIC12.4□□□□□ -0.42
Sdc1P18828 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc1P18828 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc1P18828 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc1P18828 AC121805.2-201ENSMUST00000218808 2538 ntBASIC12.4□□□□□ -0.42
Sdc1P18828 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc1P18828 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc1P18828 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC12.4□□□□□ -0.43
Sdc1P18828 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC12.4□□□□□ -0.43
Sdc1P18828 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Gm13337-201ENSMUST00000119183 1594 ntBASIC12.39□□□□□ -0.43
Sdc1P18828 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC12.39□□□□□ -0.43
Sdc1P18828 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC12.39□□□□□ -0.43
Sdc1P18828 AC122901.1-201ENSMUST00000214203 1790 ntBASIC12.39□□□□□ -0.43
Sdc1P18828 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC12.39□□□□□ -0.43
Sdc1P18828 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC12.39□□□□□ -0.43
Sdc1P18828 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Sdc1P18828 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC12.39□□□□□ -0.43
Sdc1P18828 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
Sdc1P18828 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC12.39□□□□□ -0.43
Sdc1P18828 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC12.39□□□□□ -0.43
Sdc1P18828 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Sdc1P18828 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Gm9889-202ENSMUST00000206983 1577 ntBASIC12.39□□□□□ -0.43
Sdc1P18828 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sdc1P18828 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Sdc1P18828 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Sdc1P18828 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sdc1P18828 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sdc1P18828 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sdc1P18828 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC12.38□□□□□ -0.43
Sdc1P18828 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Sdc1P18828 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sdc1P18828 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sdc1P18828 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sdc1P18828 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sdc1P18828 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sdc1P18828 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Sdc1P18828 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC12.38□□□□□ -0.43
Sdc1P18828 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sdc1P18828 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC12.38□□□□□ -0.43
Sdc1P18828 Gm3807-201ENSMUST00000193520 1168 ntBASIC12.38□□□□□ -0.43
Sdc1P18828 AC127302.2-201ENSMUST00000215212 268 ntBASIC12.38□□□□□ -0.43
Sdc1P18828 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sdc1P18828 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Sdc1P18828 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC12.38□□□□□ -0.43
Sdc1P18828 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sdc1P18828 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sdc1P18828 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sdc1P18828 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Sdc1P18828 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Sdc1P18828 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC12.38□□□□□ -0.43
Sdc1P18828 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sdc1P18828 Pcgf5-211ENSMUST00000225920 6443 ntBASIC12.38□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms