Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Clk3O35492 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Clk3O35492 Gm5357-201ENSMUST00000212720 1924 ntBASIC14.39□□□□□ -0.11
Clk3O35492 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Clk3O35492 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clk3O35492 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
Clk3O35492 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clk3O35492 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clk3O35492 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clk3O35492 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Clk3O35492 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clk3O35492 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC14.38□□□□□ -0.11
Clk3O35492 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Clk3O35492 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clk3O35492 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
Clk3O35492 Gm24589-201ENSMUST00000116692 94 ntBASIC14.38□□□□□ -0.11
Clk3O35492 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC14.38□□□□□ -0.11
Clk3O35492 Umpk-ps-201ENSMUST00000211897 827 ntBASIC14.38□□□□□ -0.11
Clk3O35492 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clk3O35492 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clk3O35492 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clk3O35492 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clk3O35492 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clk3O35492 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC14.38□□□□□ -0.11
Clk3O35492 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clk3O35492 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Clk3O35492 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clk3O35492 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clk3O35492 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clk3O35492 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC14.38□□□□□ -0.11
Clk3O35492 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clk3O35492 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clk3O35492 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clk3O35492 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clk3O35492 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Clk3O35492 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Clk3O35492 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC14.37□□□□□ -0.11
Clk3O35492 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC14.37□□□□□ -0.11
Clk3O35492 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Clk3O35492 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC14.37□□□□□ -0.11
Clk3O35492 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Clk3O35492 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Gm17971-201ENSMUST00000190239 806 ntBASIC14.37□□□□□ -0.11
Clk3O35492 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC14.37□□□□□ -0.11
Clk3O35492 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
Clk3O35492 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clk3O35492 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clk3O35492 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Clk3O35492 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Clk3O35492 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clk3O35492 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
Clk3O35492 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clk3O35492 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clk3O35492 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clk3O35492 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clk3O35492 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Clk3O35492 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC14.36□□□□□ -0.11
Clk3O35492 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC14.36□□□□□ -0.11
Clk3O35492 Gm27459-201ENSMUST00000184860 107 ntBASIC14.36□□□□□ -0.11
Clk3O35492 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC14.36□□□□□ -0.11
Clk3O35492 AC160338.1-201ENSMUST00000214232 705 ntBASIC14.36□□□□□ -0.11
Clk3O35492 AC159301.1-201ENSMUST00000225130 1182 ntBASIC14.36□□□□□ -0.11
Clk3O35492 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clk3O35492 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clk3O35492 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Clk3O35492 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clk3O35492 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Clk3O35492 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Clk3O35492 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Clk3O35492 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
Clk3O35492 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Clk3O35492 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clk3O35492 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Clk3O35492 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
Clk3O35492 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms