Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Clp1Q99LI9 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Clp1Q99LI9 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Clp1Q99LI9 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Clp1Q99LI9 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Clp1Q99LI9 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Clp1Q99LI9 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Clp1Q99LI9 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Clp1Q99LI9 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Clp1Q99LI9 Gm14127-201ENSMUST00000117906 678 ntBASIC15.86■□□□□ 0.13
Clp1Q99LI9 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC15.86■□□□□ 0.13
Clp1Q99LI9 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Clp1Q99LI9 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC15.86■□□□□ 0.13
Clp1Q99LI9 Shd-206ENSMUST00000225145 998 ntBASIC15.86■□□□□ 0.13
Clp1Q99LI9 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Clp1Q99LI9 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Clp1Q99LI9 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
Clp1Q99LI9 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Clp1Q99LI9 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Clp1Q99LI9 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Clp1Q99LI9 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Clp1Q99LI9 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Clp1Q99LI9 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC15.86■□□□□ 0.13
Clp1Q99LI9 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Clp1Q99LI9 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Clp1Q99LI9 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Clp1Q99LI9 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Clp1Q99LI9 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Clp1Q99LI9 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Clp1Q99LI9 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Clp1Q99LI9 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
Clp1Q99LI9 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC15.85■□□□□ 0.13
Clp1Q99LI9 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Clp1Q99LI9 Gm6473-201ENSMUST00000188572 1210 ntBASIC15.85■□□□□ 0.13
Clp1Q99LI9 AC090659.2-201ENSMUST00000225378 1186 ntBASIC15.85■□□□□ 0.13
Clp1Q99LI9 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Clp1Q99LI9 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Clp1Q99LI9 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Clp1Q99LI9 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Clp1Q99LI9 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Clp1Q99LI9 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Clp1Q99LI9 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Clp1Q99LI9 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Clp1Q99LI9 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Clp1Q99LI9 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Clp1Q99LI9 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Clp1Q99LI9 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Clp1Q99LI9 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Clp1Q99LI9 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Clp1Q99LI9 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Clp1Q99LI9 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Clp1Q99LI9 Gm5320-201ENSMUST00000207163 1519 ntBASIC15.84■□□□□ 0.13
Clp1Q99LI9 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Clp1Q99LI9 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Clp1Q99LI9 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC15.84■□□□□ 0.13
Clp1Q99LI9 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Clp1Q99LI9 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Clp1Q99LI9 Gm12859-201ENSMUST00000117834 427 ntBASIC15.84■□□□□ 0.13
Clp1Q99LI9 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
Clp1Q99LI9 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC15.84■□□□□ 0.13
Clp1Q99LI9 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Clp1Q99LI9 Gm29667-201ENSMUST00000190817 490 ntBASIC15.84■□□□□ 0.13
Clp1Q99LI9 AL593843.1-201ENSMUST00000195891 145 ntBASIC15.84■□□□□ 0.13
Clp1Q99LI9 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC15.84■□□□□ 0.13
Clp1Q99LI9 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC15.84■□□□□ 0.13
Clp1Q99LI9 AC238811.1-201ENSMUST00000225302 441 ntBASIC15.84■□□□□ 0.13
Clp1Q99LI9 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Clp1Q99LI9 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Clp1Q99LI9 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Clp1Q99LI9 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC15.84■□□□□ 0.13
Clp1Q99LI9 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Clp1Q99LI9 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
Clp1Q99LI9 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Clp1Q99LI9 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Clp1Q99LI9 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Clp1Q99LI9 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Clp1Q99LI9 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC15.83■□□□□ 0.13
Clp1Q99LI9 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Clp1Q99LI9 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
Clp1Q99LI9 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Clp1Q99LI9 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Clp1Q99LI9 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Clp1Q99LI9 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Clp1Q99LI9 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC15.83■□□□□ 0.12
Clp1Q99LI9 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC15.83■□□□□ 0.12
Clp1Q99LI9 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC15.83■□□□□ 0.12
Clp1Q99LI9 Gm5479-201ENSMUST00000160578 435 ntBASIC15.83■□□□□ 0.12
Clp1Q99LI9 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Clp1Q99LI9 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Clp1Q99LI9 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Clp1Q99LI9 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Clp1Q99LI9 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Clp1Q99LI9 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Clp1Q99LI9 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Clp1Q99LI9 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Clp1Q99LI9 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Clp1Q99LI9 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
Clp1Q99LI9 Asic1-205ENSMUST00000228185 1818 ntBASIC15.82■□□□□ 0.12
Clp1Q99LI9 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms