Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
Ushbp1Q8R370 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC16.94■□□□□ 0.3
Ushbp1Q8R370 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ushbp1Q8R370 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ushbp1Q8R370 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ushbp1Q8R370 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ushbp1Q8R370 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ushbp1Q8R370 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Ushbp1Q8R370 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ushbp1Q8R370 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ushbp1Q8R370 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC16.93■□□□□ 0.3
Ushbp1Q8R370 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
Ushbp1Q8R370 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Ushbp1Q8R370 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ushbp1Q8R370 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ushbp1Q8R370 Gm2308-201ENSMUST00000166539 1004 ntBASIC16.93■□□□□ 0.3
Ushbp1Q8R370 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ushbp1Q8R370 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ushbp1Q8R370 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
Ushbp1Q8R370 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ushbp1Q8R370 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ushbp1Q8R370 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Ushbp1Q8R370 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ushbp1Q8R370 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ushbp1Q8R370 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ushbp1Q8R370 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Ushbp1Q8R370 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ushbp1Q8R370 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ushbp1Q8R370 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Ushbp1Q8R370 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ushbp1Q8R370 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Ushbp1Q8R370 Gm5421-201ENSMUST00000181698 2354 ntBASIC16.92■□□□□ 0.3
Ushbp1Q8R370 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Ushbp1Q8R370 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC16.92■□□□□ 0.3
Ushbp1Q8R370 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Ushbp1Q8R370 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC16.92■□□□□ 0.3
Ushbp1Q8R370 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Ushbp1Q8R370 Mir8117-201ENSMUST00000184773 107 ntBASIC16.92■□□□□ 0.3
Ushbp1Q8R370 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Ushbp1Q8R370 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ushbp1Q8R370 Gm7901-201ENSMUST00000120430 1597 ntBASIC16.92■□□□□ 0.3
Ushbp1Q8R370 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Ushbp1Q8R370 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ushbp1Q8R370 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Ushbp1Q8R370 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ushbp1Q8R370 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Gm45293-201ENSMUST00000209754 1812 ntBASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Chchd1-203ENSMUST00000224633 557 ntBASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ushbp1Q8R370 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Gm8242-201ENSMUST00000193029 1420 ntBASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ushbp1Q8R370 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms