Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Gm9867-201ENSMUST00000192212 2647 ntBASIC18.24■□□□□ 0.51
Brf1Q8CFK2 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Brf1Q8CFK2 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 AC025913.2-201ENSMUST00000220136 1766 ntBASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Brf1Q8CFK2 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Gm18206-201ENSMUST00000207027 926 ntBASIC18.22■□□□□ 0.51
Brf1Q8CFK2 AW822252-206ENSMUST00000208904 237 ntBASIC18.22■□□□□ 0.51
Brf1Q8CFK2 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Gm43195-201ENSMUST00000200614 2332 ntBASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Gm14780-201ENSMUST00000118387 2737 ntBASIC18.22■□□□□ 0.51
Brf1Q8CFK2 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Brf1Q8CFK2 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Brf1Q8CFK2 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Brf1Q8CFK2 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Brf1Q8CFK2 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC18.21■□□□□ 0.51
Brf1Q8CFK2 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Brf1Q8CFK2 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
Brf1Q8CFK2 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Brf1Q8CFK2 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Brf1Q8CFK2 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Brf1Q8CFK2 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Brf1Q8CFK2 AC164567.1-201ENSMUST00000219185 960 ntBASIC18.21■□□□□ 0.51
Brf1Q8CFK2 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Brf1Q8CFK2 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Brf1Q8CFK2 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Brf1Q8CFK2 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Brf1Q8CFK2 AC174678.1-201ENSMUST00000228007 2749 ntBASIC18.21■□□□□ 0.5
Brf1Q8CFK2 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.5
Brf1Q8CFK2 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms